---
phase: 01-config-and-command-foundation
verified: 2026-04-23T12:00:00Z
status: passed
score: 8/8 must-haves verified
gaps: []
---

# Phase 1: Config and Command Foundation Verification Report

**Phase Goal:** Replace agent/manual placeholder path handling with a shared config resolver and stable user commands.
**Verified:** 2026-04-23
**Status:** PASSED
**Score:** 8/8 must-haves verified

## Goal Achievement

### Observable Truths

| # | Truth | Status | Evidence |
|---|-------|--------|----------|
| 1 | Environment variables can override vault and directory names without editing generated code. | VERIFIED | `ENV_KEYS` in `paperforge/config.py` maps all 8 PAPERFORGE_* vars; `load_vault_config` applies env overrides after JSON and before explicit overrides per CONF-01. Tests `test_env_overrides_nested_json`, `test_env_override_system_dir`, `test_env_keys_has_all_required_overrides` pass. |
| 2 | Existing paperforge.json files with top-level keys or nested vault_config still resolve correctly. | VERIFIED | `read_paperforge_json` and `load_vault_config` handle both nested `vault_config` block and top-level legacy keys per CONF-04. Tests `test_nested_vault_config_is_honored`, `test_top_level_keys_override_nested_for_backward_compat`, `test_defaults_used_when_no_json` pass. |
| 3 | The shared resolver exposes every path required by paperforge paths and downstream scripts. | VERIFIED | `paperforge_paths` returns exactly 13 keys: `vault`, `system`, `paperforge`, `exports`, `ocr`, `resources`, `literature`, `control`, `library_records`, `bases`, `worker_script`, `skill_dir`, `ld_deep_script`. Test `test_paperforge_paths_returns_exact_keys` passes. |
| 4 | User can run `python -m paperforge paths` from the repo and see resolved paths. | VERIFIED | `paperforge/__main__.py` exists and exits through `cli.main()`; `python -m paperforge --vault . paths` exits 0 and prints all 13 path entries. `python -m paperforge --vault . paths --json` exits 0 and prints valid JSON with `vault`, `worker_script`, `ld_deep_script` keys. |
| 5 | Editable install exposes `paperforge` as the canonical command. | VERIFIED | `pyproject.toml` line 40 contains `[project.scripts] paperforge = "paperforge.cli:main"`; setuptools build backend declared; package name `paperforge-lite`. |
| 6 | `paperforge ocr` and `paperforge ocr run` dispatch to the same OCR worker behavior. | VERIFIED | `cli.py` lines 73-80: `ocr` parser has `default="run"` with `choices=["run"]`; dispatch_map line 122 maps both `ocr` and `ocr run` to `run_ocr`. Tests `test_ocr_run_dispatch` and `test_ocr_alias_dispatch` in `test_cli_worker_dispatch.py` pass. |
| 7 | Legacy direct worker invocation still works with `python ...literature_pipeline.py --vault <vault> status`. | VERIFIED | `literature_pipeline.py` wraps `paperforge.config`; subprocess test `test_status_exits_zero` in `test_legacy_worker_compat.py` runs `python pipeline/worker/scripts/literature_pipeline.py --vault <vault> status` and asserts returncode 0 with no ImportError. |
| 8 | Setup deployment accounts for the resolver package when worker and skill scripts are copied into a vault. | VERIFIED | `setup_wizard.py` lines 985-999 uses `shutil.copytree` to deploy `paperforge/` to both `<pf_path>/worker/paperforge/` and `<vault>/<skill_dir>/literature-qa/paperforge/`. Test `test_status_exits_zero` uses PYTHONPATH to simulate installed-package scenario. |

**Score:** 8/8 truths VERIFIED

### Required Artifacts

| Artifact | Expected | Status | Details |
|----------|----------|--------|---------|
| `paperforge/config.py` | Shared config and path resolver | VERIFIED | 291 lines; exports `DEFAULT_CONFIG`, `ENV_KEYS`, `resolve_vault`, `load_vault_config`, `paperforge_paths`, `paths_as_strings`; stdlib only; no OCR secrets |
| `paperforge/cli.py` | Stable command parser and worker dispatch | VERIFIED | 153 lines; `build_parser` with subcommands `paths`, `status`, `selection-sync`, `index-refresh`, `deep-reading`, `ocr`; exports `main`, `build_parser` |
| `paperforge/__main__.py` | `python -m paperforge` fallback | VERIFIED | Imports and calls `cli.main()` |
| `pyproject.toml` | `paperforge` console script entry point | VERIFIED | `[project.scripts] paperforge = "paperforge.cli:main"` at line 40 |
| `pipeline/worker/scripts/literature_pipeline.py` | Legacy worker backed by shared resolver | VERIFIED | Imports `paperforge.config` (lines 132, 142); preserves `load_vault_config` and `pipeline_paths` API |
| `skills/literature-qa/scripts/ld_deep.py` | /LD-deep helper backed by shared resolver | VERIFIED | Imports `paperforge.config` (lines 19, 28); preserves `_load_vault_config` and `_paperforge_paths` API |
| `setup_wizard.py` | Deployment copy/install logic for resolver | VERIFIED | Lines 985-999 deploy `paperforge/` to parallel locations |
| `scripts/validate_setup.py` | Validation config loading via shared resolver | VERIFIED | Line 26 imports `paperforge.config.load_vault_config` |
| `tests/test_config.py` | Resolver contract tests | VERIFIED | 448 lines; 17 test functions covering defaults, env precedence, JSON compat, path inventory |
| `tests/test_cli_paths.py` | Paths command tests | VERIFIED | 88 lines; 3 tests for `--json` output, unresolved token rejection |
| `tests/test_cli_worker_dispatch.py` | Worker dispatch tests | VERIFIED | 144 lines; 6 tests for status/selection-sync/index-refresh/deep-reading/ocr/run dispatch |
| `tests/test_legacy_worker_compat.py` | Legacy worker compatibility tests | VERIFIED | 193 lines; tests wrapper matching shared resolver and subprocess smoke test |
| `tests/test_ld_deep_config.py` | /LD-deep config compatibility tests | VERIFIED | 133 lines; tests wrapper matching shared resolver for ocr/records/literature |
| `tests/test_command_docs.py` | Command documentation regression tests | VERIFIED | 239 lines; tests stable commands present and unresolved tokens absent |

### Key Link Verification

| From | To | Via | Status | Details |
|------|----|----|--------|---------|
| `paperforge/config.py` | `paperforge.json` | `load_vault_config(vault)` | WIRED | `read_paperforge_json` reads both nested `vault_config` and top-level keys |
| `paperforge/config.py` | process environment | `ENV_KEYS` overlay | WIRED | Env vars `PAPERFORGE_*` override JSON per CONF-01 |
| `paperforge/cli.py` | `paperforge.config` | `resolve_vault/load_vault_config/paperforge_paths` | WIRED | Lines 18-24 import all resolver functions |
| `paperforge/cli.py` | `pipeline.worker.scripts.literature_pipeline` | worker function dispatch | WIRED | Lines 27-33 import workers; lines 117-130 dispatch by command name |
| `literature_pipeline.py` | `paperforge.config` | `load_vault_config`/`paperforge_paths` wrapper | WIRED | Lines 132, 142 import shared resolver; existing API preserved |
| `ld_deep.py` | `paperforge.config` | `_load_vault_config`/`_paperforge_paths` wrapper | WIRED | Lines 19, 28 import shared resolver; existing API preserved |
| `setup_wizard.py` | `paperforge/` | `shutil.copytree` | WIRED | Lines 985-999 copy package to parallel install locations |
| `validate_setup.py` | `paperforge.config` | `load_vault_config` | WIRED | Line 26 imports shared resolver |
| `command/*.md` | `paperforge.cli` | documented stable commands | WIRED | `lp-status.md`, `lp-selection-sync.md`, `lp-index-refresh.md`, `lp-ocr.md`, `ld-deep.md` all use `paperforge status`/`selection-sync`/`index-refresh`/`ocr run`/`deep-reading` as primary commands |

### Data-Flow Trace (Level 4)

| Artifact | Data Variable | Source | Produces Real Data | Status |
|----------|---------------|--------|-------------------|--------|
| `paperforge/config.py` | `cfg` dict | `load_vault_config(vault)` | N/A (config only) | N/A |
| `paperforge/cli.py` | `vault` Path | `resolve_vault(cli_vault=args.vault)` | N/A (config only) | N/A |
| `paperforge/cli.py` | JSON output | `paths_as_strings(paperforge_paths(vault, cfg))` | N/A (config only) | N/A |

### Behavioral Spot-Checks

| Behavior | Command | Result | Status |
|----------|---------|--------|--------|
| `python -m paperforge paths --json` emits valid JSON | `python -m paperforge --vault . paths --json` | `{"vault": "...", "worker_script": "...", "ld_deep_script": "..."}` | PASS |
| `python -m paperforge paths` emits text paths | `python -m paperforge --vault . paths` | 13 `key: absolute_path` lines printed | PASS |
| `paperforge ocr` aliases to `paperforge ocr run` | dispatch test `test_ocr_alias_dispatch` | stub called with vault | PASS |
| `paperforge status` dispatch works | dispatch test `test_status_dispatch` | stub called with vault | PASS |
| Legacy direct worker invocation exits 0 | `python pipeline/worker/scripts/literature_pipeline.py --vault . status` | returncode 0, no ImportError | PASS |

### Requirements Coverage

| Requirement | Source Plan | Description | Status | Evidence |
|-------------|-------------|-------------|--------|----------|
| CONF-01 | 01-01 | Env vars override JSON values | SATISFIED | `ENV_KEYS` maps all 8 PAPERFORGE_* vars; `load_vault_config` applies env after JSON; tests `test_env_overrides_nested_json`, `test_env_override_system_dir`, `test_explicit_overrides_win_over_env` pass |
| CONF-02 | 01-01, 01-02 | User can inspect resolved paths via command | SATISFIED | `python -m paperforge paths --json` exits 0 and prints JSON; `paperforge/cli.py` exposes `paths` subcommand with `--json` flag; test `test_paths_json_structure` passes |
| CONF-03 | 01-01, 01-02, 01-03, 01-04 | All consumers use the same resolver | SATISFIED | `literature_pipeline.py`, `ld_deep.py`, `validate_setup.py`, `setup_wizard.py`, and CLI all import from `paperforge.config`; `paperforge_paths` and `load_vault_config` are the single source of truth; tests `TestWorkerLoadVaultConfig`, `TestDeepLoadVaultConfig` pass |
| CONF-04 | 01-01, 01-03 | Existing paperforge.json backward compatible | SATISFIED | `read_paperforge_json` handles both nested `vault_config` and top-level keys; top-level keys override nested per CONF-04; tests `test_nested_vault_config_is_honored`, `test_top_level_keys_override_nested_for_backward_compat` pass |
| CMD-01 | 01-02, 01-04 | Stable commands: `paperforge status`, `paperforge ocr run`, `paperforge deep-reading` | SATISFIED | `cli.py` implements all subcommands; `paperforge paths`, `paperforge status`, `paperforge selection-sync`, `paperforge index-refresh`, `paperforge ocr run`, `paperforge deep-reading` all wired; `pyproject.toml` declares console script; command docs use stable commands as primary |
| CMD-02 | 01-02, 01-03, 01-04 | Legacy direct worker invocation supported | SATISFIED | `literature_pipeline.py` preserves `load_vault_config(vault)` and `pipeline_paths(vault)` API; subprocess test `test_status_exits_zero` passes; command docs show legacy fallback as secondary option |
| CMD-03 | 01-02, 01-04 | Command output uses actionable status, avoids placeholders | SATISFIED | `paths --json` prints only absolute resolved paths; `paths` text mode prints `key: absolute_path` lines; no `<system_dir>` or `<resources_dir>` tokens in output; tests `test_paths_json_no_unresolved_tokens`, `test_paths_text_no_unresolved_tokens`, `test_lp_doc_no_legacy_python_literature_pipeline` pass |
| DEEP-02 | 01-03 | /LD-deep prepare uses same resolved paths as workers | SATISFIED | `ld_deep._load_vault_config` and `ld_deep._paperforge_paths` wrap `paperforge.config`; `test_paperforge_paths_values_match_shared_resolver` passes; `ld-deep.md` references `paperforge deep-reading` and `paperforge paths --json` for path discovery |

All 8 requirement IDs (CONF-01, CONF-02, CONF-03, CONF-04, CMD-01, CMD-02, CMD-03, DEEP-02) are accounted for in Plan frontmatter and all are SATISFIED.

### Anti-Patterns Found

| File | Line | Pattern | Severity | Impact |
|------|------|---------|----------|--------|
| None found | - | - | - | - |

No TODO/FIXME/placeholder comments, empty implementations, hardcoded empty stubs, or unresolved path tokens found in Phase 1 artifacts.

### Human Verification Required

None. All Phase 1 criteria are verifiable programmatically.

### Gaps Summary

None. Phase 1 goal fully achieved:

- `paperforge/config.py` is the single tested contract for path resolution, containing no OCR doctor, PDF resolver, or Base redesign behavior (per Plan 01 success criteria)
- CLI launcher has package entry point and `python -m paperforge` fallback (per Plan 02 success criteria)
- Worker, `/LD-deep`, setup wizard, and validation all consume the same resolver; copied installations deploy the package (per Plan 03 success criteria)
- User-facing docs use stable `paperforge ...` commands; unresolved `<system_dir>` path tokens removed from user-run examples; legacy invocation documented as fallback (per Plan 04 success criteria)
- All 8 requirement IDs satisfied
- 58 tests pass across 6 test files
- Behavioral spot-checks confirm CLI emits valid JSON and resolved paths, dispatch works, legacy invocation exits 0

---

_Verified: 2026-04-23_
_Verifier: the agent (gsd-verifier)_
