From b6fc6d4470150ece760a5c4c05574e05088f3e07 Mon Sep 17 00:00:00 2001 From: Research Assistant Date: Tue, 19 May 2026 14:46:53 +0800 Subject: [PATCH] chore(skill): scaffold molecule and atom files --- paperforge/skills/paperforge/atoms/clarify-user-intent.md | 3 +++ paperforge/skills/paperforge/atoms/extract-methodology-card.md | 3 +++ paperforge/skills/paperforge/atoms/retrieval-routing.md | 3 +++ paperforge/skills/paperforge/atoms/write-project-log.md | 3 +++ .../skills/paperforge/atoms/write-project-reading-log.md | 3 +++ paperforge/skills/paperforge/atoms/write-reading-log-jsonl.md | 3 +++ .../skills/paperforge/molecules/capture-project-knowledge.md | 3 +++ paperforge/skills/paperforge/molecules/deep-analyze-paper.md | 3 +++ paperforge/skills/paperforge/molecules/discover-papers.md | 3 +++ .../skills/paperforge/molecules/find-supporting-evidence.md | 3 +++ paperforge/skills/paperforge/molecules/read-known-paper.md | 3 +++ 11 files changed, 33 insertions(+) create mode 100644 paperforge/skills/paperforge/atoms/clarify-user-intent.md create mode 100644 paperforge/skills/paperforge/atoms/extract-methodology-card.md create mode 100644 paperforge/skills/paperforge/atoms/retrieval-routing.md create mode 100644 paperforge/skills/paperforge/atoms/write-project-log.md create mode 100644 paperforge/skills/paperforge/atoms/write-project-reading-log.md create mode 100644 paperforge/skills/paperforge/atoms/write-reading-log-jsonl.md create mode 100644 paperforge/skills/paperforge/molecules/capture-project-knowledge.md create mode 100644 paperforge/skills/paperforge/molecules/deep-analyze-paper.md create mode 100644 paperforge/skills/paperforge/molecules/discover-papers.md create mode 100644 paperforge/skills/paperforge/molecules/find-supporting-evidence.md create mode 100644 paperforge/skills/paperforge/molecules/read-known-paper.md diff --git a/paperforge/skills/paperforge/atoms/clarify-user-intent.md b/paperforge/skills/paperforge/atoms/clarify-user-intent.md new file mode 100644 index 00000000..19093704 --- /dev/null +++ b/paperforge/skills/paperforge/atoms/clarify-user-intent.md @@ -0,0 +1,3 @@ +# clarify-user-intent + +Clarify the user's intent before dispatching to a skill workflow. diff --git a/paperforge/skills/paperforge/atoms/extract-methodology-card.md b/paperforge/skills/paperforge/atoms/extract-methodology-card.md new file mode 100644 index 00000000..57b39e5b --- /dev/null +++ b/paperforge/skills/paperforge/atoms/extract-methodology-card.md @@ -0,0 +1,3 @@ +# extract-methodology-card + +Extract a structured methodology card from a paper. diff --git a/paperforge/skills/paperforge/atoms/retrieval-routing.md b/paperforge/skills/paperforge/atoms/retrieval-routing.md new file mode 100644 index 00000000..b138b532 --- /dev/null +++ b/paperforge/skills/paperforge/atoms/retrieval-routing.md @@ -0,0 +1,3 @@ +# retrieval-routing + +Route between vector and memory retrievers based on query type. diff --git a/paperforge/skills/paperforge/atoms/write-project-log.md b/paperforge/skills/paperforge/atoms/write-project-log.md new file mode 100644 index 00000000..bd73fbd5 --- /dev/null +++ b/paperforge/skills/paperforge/atoms/write-project-log.md @@ -0,0 +1,3 @@ +# write-project-log + +Write a general project log entry. diff --git a/paperforge/skills/paperforge/atoms/write-project-reading-log.md b/paperforge/skills/paperforge/atoms/write-project-reading-log.md new file mode 100644 index 00000000..70b31bf0 --- /dev/null +++ b/paperforge/skills/paperforge/atoms/write-project-reading-log.md @@ -0,0 +1,3 @@ +# write-project-reading-log + +Write a formatted reading log entry to the project README. diff --git a/paperforge/skills/paperforge/atoms/write-reading-log-jsonl.md b/paperforge/skills/paperforge/atoms/write-reading-log-jsonl.md new file mode 100644 index 00000000..a0f65190 --- /dev/null +++ b/paperforge/skills/paperforge/atoms/write-reading-log-jsonl.md @@ -0,0 +1,3 @@ +# write-reading-log-jsonl + +Append a structured reading entry to the JSONL reading log. diff --git a/paperforge/skills/paperforge/molecules/capture-project-knowledge.md b/paperforge/skills/paperforge/molecules/capture-project-knowledge.md new file mode 100644 index 00000000..3c2a6daa --- /dev/null +++ b/paperforge/skills/paperforge/molecules/capture-project-knowledge.md @@ -0,0 +1,3 @@ +# capture-project-knowledge + +Capture and persist knowledge gained from reading into project memory. diff --git a/paperforge/skills/paperforge/molecules/deep-analyze-paper.md b/paperforge/skills/paperforge/molecules/deep-analyze-paper.md new file mode 100644 index 00000000..d286399c --- /dev/null +++ b/paperforge/skills/paperforge/molecules/deep-analyze-paper.md @@ -0,0 +1,3 @@ +# deep-analyze-paper + +Perform deep structural and methodological analysis of a paper. diff --git a/paperforge/skills/paperforge/molecules/discover-papers.md b/paperforge/skills/paperforge/molecules/discover-papers.md new file mode 100644 index 00000000..f9e2da88 --- /dev/null +++ b/paperforge/skills/paperforge/molecules/discover-papers.md @@ -0,0 +1,3 @@ +# discover-papers + +Search for and discover new papers relevant to the project. diff --git a/paperforge/skills/paperforge/molecules/find-supporting-evidence.md b/paperforge/skills/paperforge/molecules/find-supporting-evidence.md new file mode 100644 index 00000000..b27ba204 --- /dev/null +++ b/paperforge/skills/paperforge/molecules/find-supporting-evidence.md @@ -0,0 +1,3 @@ +# find-supporting-evidence + +Find evidence to support a specific claim or question. diff --git a/paperforge/skills/paperforge/molecules/read-known-paper.md b/paperforge/skills/paperforge/molecules/read-known-paper.md new file mode 100644 index 00000000..0766ca57 --- /dev/null +++ b/paperforge/skills/paperforge/molecules/read-known-paper.md @@ -0,0 +1,3 @@ +# read-known-paper + +Locate and interactively read a single known paper.