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8 commits

Author SHA1 Message Date
LLLin000
984dfc6114 Unify PFResult envelope: data.matches with consistent field names, --deep flag 
- search.py: normalize FTS results to unified field set (score from rank,
  add text/heading/source keys). Result key unchanged (already 'matches').
- retrieve.py: rename data.chunks to data.matches in standard and deep paths.
  Map field names: paper_id->zotero_key, chunk_text->text, section_path->heading.
  Expand enrichment SQL to fetch journal and domain.
  --deep flag already wired in CLI parser.
- tests/cli/test_json_contracts.py: add contract tests verifying PFResult
  envelope shape, data.matches key presence, unified field names,
  --deep flag acceptance, and field type correctness.
 2026-07-10 23:10:36 +08:00
Research Assistant
1e3b15397b test: finalize OCR structured pipeline phase4 runtime integration 2026-06-05 11:32:46 +08:00
Research Assistant
22d189e69e feat: surface OCR structured health in doctor and status 2026-06-05 10:35:23 +08:00
Research Assistant
b9885f369d feat: add Gemini CLI agent platform support (.gemini/skills) 2026-06-01 19:46:17 +08:00
Research Assistant
2b552be9e6 feat: runtime contract hardening + skill/command truth alignment (Package A+B) 
Atomic snapshots, canonical index mutation serialization, sync post-clean truth,
plugin path config-awareness, embed stop signal honesty, full snapshot bootstrap,
pf_ prefix unification, workflow command/lifecycle/path corrections,
mechanical/cognitive route separation with unknown-command guard.
 2026-05-16 22:38:43 +08:00
Research Assistant
74c8e4ca76 fix: tests validate PFResult envelope for status --json contract change 
Updates all tests that assert on status --json output to read from PFResult envelope.

Code was intentionally changed in Phase 57 to wrap JSON output in PFResult {ok, command, version, data, error}. Tests must validate the new contract shape, not the old flat dict format.
 2026-05-09 17:37:14 +08:00
Research Assistant
bbd39a90d3 v1.4.17rc4 
Milestone v2.1: Contract-Driven Architecture & Engineering Hardening

- Stop the Bleeding: version sync checker, PyYAML hardening, install docs unification
- Contract Layer: PFResult/PFError dataclasses, ErrorCode enum, --json wrapping
- Service Extraction: sync.py decomposed into 3 adapters + SyncService
- State Machine: PdfStatus/OcrStatus/Lifecycle enums, transitions, field registry
- Setup Modularization: setup_wizard.py decomposed into 6 classes

173 tests passing, 0 regressions.
 2026-05-09 17:05:07 +08:00
Research Assistant
ab7ac0d6ab feat(52-golden-datasets-cli-contracts): add CLI contract tests with snapshot integration 
- tests/cli/ with conftest.py (cli_invoker, vault_builder, mock_ocr_backend fixtures)
- test_contract_helpers.py with normalize_snapshot, assert_valid_json, assert_json_shape
- 3 test files covering all 8 CLI commands (paths, status, sync, ocr, doctor,
  repair, context, setup) with exit code, output shape, and error contracts
- fixtures/ocr/mock_ocr_backend.py with 4 mock modes (success, pending, error, timeout)
- pyproject.toml: added pytest-snapshot, responses, pytest-timeout, pytest-mock,
  coverage; added testpaths and layer markers
- All 27 tests pass (CLI-01, CLI-02, CLI-03 satisfied)
 2026-05-08 23:32:03 +08:00