Commit graph

96 commits

Author SHA1 Message Date
Research Assistant
11c787ed96 fix: add v1.4.18 entry to versions.json — missing from bump script 2026-05-10 11:37:58 +08:00
Research Assistant
0adfde6ae9 bump: 1.4.17 -> 1.4.18 2026-05-10 11:25:45 +08:00
Research Assistant
06c2ce5f9d fix(plugin): extract testable functions to src/testable.js, fix vitest imports
- Move resolvePythonExecutable, getPluginVersion, classifyError, ACTIONS, etc. to src/testable.js
- main.js now requires from ./src/testable.js instead of inline duplication
- Tests import from ../src/testable.js (no obsidian dependency)
- Remove vitest obsidian mock setup (no longer needed)
- Fixes L3 Plugin Tests that failed because main.js requires 'obsidian'
2026-05-10 11:03:31 +08:00
Research Assistant
71d2d05f41 fix(plugin): mock obsidian module for vitest — main.js requires it at top level 2026-05-10 10:52:21 +08:00
Research Assistant
aff3cfe622 fix(plugin): update Vitest imports after src/ inline refactor
- Add named exports for testable functions (resolvePythonExecutable, getPluginVersion, etc.)
- Update test imports from ../src/*.js to ../main.js
- Fix repair action test: disabled flag was removed when ACTIONS was inlined
2026-05-10 10:48:06 +08:00
CTZ
152056d044 fix(plugin): cross-platform macOS Python/Zotero/BBT detection and pip bootstrap
- Add paperforgeEnrichedEnv() to enrich PATH for GUI Obsidian on macOS/Linux
- Add getPaperforgePythonCmd() preferring Homebrew/pyenv over Apple CLT Python
- Add tryExecPythonVersion() with multi-candidate fallback for pre-check
- Add scanBbtUnderProfiles() using real Zotero Profiles/extensions/ layout
- Add scanBbtDirectChildren() for safe shallow BBT folder detection
- Add macOS /Applications/Zotero.app and Linux Zotero install detection
- Use paperforgeEnrichedEnv() in setup wizard spawn calls
- Add --user flag to pip install on non-Windows
- Pass PaddleOCR key as --paddleocr-key CLI arg instead of env var
- Add Apple CLT stub Python specific error message in _formatSetupError()

Based on PR #1 by Chartreuse310
Original commit: 156f653 (improve setup modal i18n and update directory defaults)
Co-authored-by: CTZ <yoyflying@163.com>
2026-05-10 10:37:08 +08:00
Research Assistant
15d849f7e6 fix: remove deprecated control_dir from doctor/setup/repair; enable repair button; fix UTF-8 encoding in doctor output 2026-05-10 01:50:24 +08:00
Research Assistant
caab9ff9ee refactor: inline src/ modules back into main.js — single file, no runtime require 2026-05-09 23:48:08 +08:00
Research Assistant
ba1a5cc7e0 revert: remove formal-library deprecation console.warn from plugin 2026-05-09 23:13:02 +08:00
Research Assistant
05629bce82 refactor: v2.1 contract hardening — PFResult unification, ErrorCode expansion, adapter cleanup, SyncService orchestration
Core contract:
- ErrorCode: 8→26 with _missing_() graceful degradation for unknown codes
- PFResult: +warnings/next_actions, PFError: +suggestions
- OcrStatus: 4→9 granular states (NONE/QUEUED/BLOCKED/NO_PDF/DONE_INCOMPLETE restored 1:1)
- field_registry.yaml: +owner/deprecated/replacement/enum values/default

Adapter cleanup:
- new core/io.py (read_json/write_json), core/date_utils.py (extract_year)
- new adapters/collections.py (build_collection_lookup)
- adapters/bbt.py: cut worker dependency, _private→public+alias
- worker/_utils.py + _domain.py: re-export from core instead of duplicate defs

Command unification:
- All 6 commands (sync/status/ocr/deep/repair/dashboard) → PFResult
- cli.py --json dest unified to 'json' (was json_output on status/doctor)
- commands/sync.py → SyncService (no more int/dict/PFResult mixing)

Service hardening:
- SyncService.run() orchestrates full sync lifecycle (select→index→clean)
- cleanup loops (orphaned records, flat notes) migrated from worker
- worker/sync.py: freeze line + services→worker one-way dependency
- plugin/main.js: formal-library.json fallback deprecation warning

Verification: 181/181 tests, 0 new lint errors
2026-05-09 22:20:07 +08:00
Research Assistant
0d49b5d285 fix: pre-existing test issues blocking CI on non-Windows platforms
test_ocr_preflight: mock fitz.open (not builtins.open) + set needs_sanitize=True
  - Code uses fitz.open(), not builtins.open() — mock was targeting wrong function
  - fitz.open() only called when meta.needs_sanitize is true — mock returned {} which skipped it
  - These tests were always broken but CI never ran before v2.1

test_e2e_cli: guard against None stdout in doctor_verdict test on Windows CI

L3 runtime.test.mjs: use platform-agnostic path matching
  - path.join produces / on Linux but \\\\ on Windows — test used \\\\ only
2026-05-09 18:06:37 +08:00
Research Assistant
c16e3e5198 fix(ci): two pre-existing CI config issues blocking pipeline
L2: removed -m cli marker filter (no test had the marker → exit code 5)
L3: committed package-lock.json (npm ci failed without it)
gitignore: added paperforge/plugin/node_modules/
These are CI config issues, not code regressions from v2.1.
2026-05-09 17:50:38 +08:00
Research Assistant
bbd39a90d3 v1.4.17rc4
Milestone v2.1: Contract-Driven Architecture & Engineering Hardening

- Stop the Bleeding: version sync checker, PyYAML hardening, install docs unification
- Contract Layer: PFResult/PFError dataclasses, ErrorCode enum, --json wrapping
- Service Extraction: sync.py decomposed into 3 adapters + SyncService
- State Machine: PdfStatus/OcrStatus/Lifecycle enums, transitions, field registry
- Setup Modularization: setup_wizard.py decomposed into 6 classes

173 tests passing, 0 regressions.
2026-05-09 17:05:07 +08:00
Research Assistant
2cb223ddbb feat(53-001): extract src/ modules from main.js and add Vitest test infrastructure
- runtime.js: resolvePythonExecutable, getPluginVersion, checkRuntimeVersion
- errors.js: classifyError, buildRuntimeInstallCommand, parseRuntimeStatus
- commands.js: ACTIONS, buildCommandArgs, runSubprocess
- package.json with vitest + obsidian-test-mocks + jsdom
- vitest.config.ts with jsdom environment
- 42 Vitest tests across 3 test files
- Refactored main.js to import from src/ modules
2026-05-09 00:05:19 +08:00
Research Assistant
5ed8cf5916 fix: ensure switching class is always cleaned up after action 2026-05-08 19:37:47 +08:00
Research Assistant
44619e1560 fix: add missing v1.12 Chinese i18n keys and fix lang fallback 2026-05-08 19:25:26 +08:00
Research Assistant
2b5b649bd9 feat: enable Run Doctor quick action (backend was already functional) 2026-05-08 19:20:05 +08:00
Research Assistant
c117e43a5e chore: remove redundant Run All Pending OCR button 2026-05-08 19:16:43 +08:00
Research Assistant
d941acef1c fix: refresh dashboard stats after sync completes 2026-05-08 19:13:03 +08:00
Research Assistant
4c9bbd9917 bump: 1.4.17rc2 -> 1.4.17rc3 2026-05-08 17:48:10 +08:00
Research Assistant
7e6abc2070 test: prefer repo source for OCR doctor fixtures 2026-05-08 17:47:45 +08:00
Research Assistant
79b540e490 feat(54-001/003): add OCR queue buttons, /pf-deep handoff, pending action, and privacy modal
- Add i18n keys for OCR queue, /pf-deep handoff, and privacy warning (en/zh)
- Add OCR toggle button to per-paper dashboard card (set do_ocr via processFrontMatter)
- Change /pf-deep copy button to copy full '/pf-deep <key>' command
- Add agent platform label below copy button
- Add Run All Pending OCR dynamic action card
- Add once-per-session OCR privacy warning modal (PaperForgeOcrPrivacyModal)
- Add CSS for queue hint, pending action card, platform label, and privacy modal
2026-05-08 17:47:39 +08:00
Research Assistant
70767c413a feat(52-001): add Runtime Health UI, dashboard drift banner, extended error classification, Copy diagnostic
- Add Runtime Health section in settings showing Plugin vX vs Python vY
- Add match/mismatch badge (green/red) with version comparison
- Add 'Sync Runtime' button that runs pip install --upgrade
- Add Dashboard yellow drift warning banner on version mismatch
- Extend _formatSetupError to 10 categories (pip/network/SSL/disk/Python/etc)
- Add 'Copy diagnostic' button on setup failure with env info
- Add all i18n keys in both en and zh
- Add CSS for badge states, drift banner, and diagnostic button
2026-05-08 17:47:39 +08:00
Research Assistant
18b6f07ce6 chore(52-001): align manifest sources, bump minAppVersion to 1.9.0, add PyYAML dep
- Add clarifying comment in bump.py about canonical version source
- Update root and plugin manifest.json minAppVersion from 1.0.0 to 1.9.0
- Update versions.json compatibility mapping to 1.9.0
- Add pyyaml>=6.0 to pyproject.toml dependencies
2026-05-08 17:47:38 +08:00
Research Assistant
6bcc32a5b6 feat(51-001): consistent interpreter usage, zotero_data_dir required with validation
Part A: All 8 subprocess call sites now use resolvePythonExecutable with
settings and extraArgs propagation for py -3 support:
- _fetchVersion, _fetchStats, _runAction, _preCheck, _runInstall, _stepComplete,
  _autoUpdate, command palette
- Zero bare 'python' spawn/exec calls remain
- Spaces-in-path safe via execFile instead of shell-string exec

Part B: zotero_data_dir required with validation:
- field_zotero_placeholder i18n updated to 'Required'/'必填'
- Wizard placeholder uses t() call instead of hardcoded string
- _validateStep3 checks: non-empty -> exists -> isDirectory -> has storage/
- _validate() rejects missing zotero_data_dir with validate_zotero i18n key
- zotero_data_dir always passed to --zotero-data flag (no conditional)
2026-05-08 17:47:38 +08:00
Research Assistant
27d926d83b feat(51-001): add Python interpreter row, custom path input, and validate button to settings UI
- Add field_python_interp, field_python_custom, btn_validate i18n keys (en/zh)
- Add read-only resolved interpreter row with source label (auto-detected/manual/stale)
- Add custom path text input wired to settings.python_path with auto-save
- Add Validate button with full check chain: exists -> executable -> version >= 3.10 -> pip warn
- Stale saved override shows [!!] warning prefix in read-only row
- Input changes re-render the read-only row and clear/re-set stale flag
2026-05-08 17:47:38 +08:00
Research Assistant
31cd04b4cc feat(51-001): refactor resolvePythonExecutable with manual override and reload validation
- Add python_path to DEFAULT_SETTINGS for storing manual override path
- Refactor resolvePythonExecutable(vaultPath, settings) to return {path, source, extraArgs}
- Manual override (settings.python_path) bypasses auto-detection when set and exists
- Detection order: manual -> .paperforge-test-venv -> .venv -> venv -> py -3 -> python -> python3
- py -3 detection uses extraArgs for proper launcher argument passing
- Stale override re-validated on plugin load; _python_path_stale flag set without clearing
- Update all existing call sites to destructure .path from new return type
2026-05-08 17:47:38 +08:00
Research Assistant
1b1984c619 fix: collection panel cumulative lifecycle counts, remove ai_context_ready 2026-05-08 01:47:00 +08:00
Research Assistant
e99987793a fix: install from tagged release URL, version consistency check on startup 2026-05-08 01:41:54 +08:00
Research Assistant
69111e15c4 fix: show PaperForge version in setup wizard Complete step 2026-05-08 01:39:12 +08:00
Research Assistant
fa3187519d fix: add --version to CLI, fix plugin version detection to use python -c 2026-05-08 01:35:24 +08:00
Research Assistant
5dc1b720eb fix: persist dashboard version from Python package, skip base rewrite on no-change 2026-05-08 01:33:33 +08:00
Research Assistant
6c52e33545 chore: bump version to 1.4.17rc2 2026-05-08 01:26:19 +08:00
Research Assistant
dd71bb0f79 fix: v1.4.17rc2 — OCR quote fix, 4-stage lifecycle, .env fallback, Codex support, deep-reading anchors, auto-update pip 2026-05-08 01:26:04 +08:00
Research Assistant
315abdcc3a chore: bump version to 1.4.17rc1 2026-05-07 21:54:35 +08:00
Research Assistant
e742df7888 fix(merge-gate): upgrade migration safeguards, index path integrity, and Python version alignment
- migrate_to_workspace: preserve legacy flat notes even without canonical index
- migrate_to_workspace: reconcile legacy library-record do_ocr/analyze flags including false overrides
- migrate_to_workspace: handle non-canonical legacy filenames via frontmatter title
- asset_index: only advertise fulltext_path/deep_reading_path when files exist
- asset_index: prefer note frontmatter over legacy library-records, fall back to legacy
- setup_wizard: require Python >=3.10 instead of >=3.8
- plugin main.js: align Python version messaging to 3.10+
- ocr.py: auto_analyze_after_ocr reads from formal note paths, not library-records
2026-05-07 21:51:58 +08:00
Research Assistant
53ad7ac74c feat(49-module-hardening): main.js hardening — env-based API key, createEl() DOM
- HARDEN-04: Pass PADDLEOCR_API_TOKEN via env var instead of CLI --paddleocr-key
- HARDEN-05: Replace innerHTML with createEl() DOM API for directory tree rendering
2026-05-07 20:06:21 +08:00
Research Assistant
db042cd6dd chore: complete v1.9 Frontmatter Rationalization & Library-Record Deprecation
Milestone v1.9 — 5 phases, 28 requirements, 188 tests passing.

Key changes:
- Frontmatter rationalization: slimmed formal note frontmatter (28→16 fields), created per-workspace paper-meta.json
- Library-record deprecation: removed library_record_markdown(), sync no longer creates library-records
- Workspace stabilization: unconditional workspace creation, fulltext bridge, discussion.py reads canonical index
- Base view fix: removed ghost lifecycle fields, restored workflow flags, Literature/ folder filter
- Plugin sync: version badge reads paperforge_version from index envelope

Archived: .planning/milestones/v1.9-ROADMAP.md, .planning/milestones/v1.9-REQUIREMENTS.md
2026-05-07 10:11:42 +08:00
Research Assistant
ddeb0cfea2 fix: validate setup_complete against paperforge.json; broaden BBT detection with recursive scan 2026-05-06 22:47:21 +08:00
Research Assistant
29edb2d811 fix: overhaul install flow clarity and non-destructive incremental setup
- Move Better BibTeX auto-export to post-install step (exports dir created by setup)
- Clarify wizard overview: show resources_dir/literature_dir/control_dir hierarchy
- Fix post-install flow order: BBT export → enable plugin → dashboard → sync
- Split do_ocr and analyze marks into separate steps (OCR before deep-reading)
- Mark all literature flags via Base views, not manual file editing
- Make installer incremental: preserve existing files, only create missing ones
- Remove destructive junction/link deletion in TUI wizard
- Merge .env instead of overwriting; skip overwrite for AGENTS.md, docs, plugin
- Update TUI, headless, and plugin completion output to match corrected flow
- Add regression test for non-destructive setup behavior
2026-05-06 22:47:07 +08:00
Research Assistant
1d52d94445 fix: plugin pip bootstrap install and setup_cli non-fatal; add regression tests 2026-05-06 22:46:56 +08:00
Research Assistant
b2e446eb21 fix: harden repair paths, slugify edge case, OCR meta resilience, venv python detection, and repair exit handling 2026-05-06 22:09:29 +08:00
Research Assistant
4fe55e11dc feat: restore phases 31-34 from stash — dashboard multi-view, deep-reading mode, jump button, planning docs
- Phase 31: Bug fixes (version display, lifecycle alignment, AI Ready removal)
- Phase 32: Deep-reading mode detection (_resolveModeForFile, identity guard)
- Phase 33: Deep-reading dashboard (status card, Pass 1 extraction, AI Q&A)
- Phase 34: Jump to deep reading button (i18n, conditional visibility)
- Planning files for phases 31-36
- CSS: Section 33 deep-reading styles
- asset_index.py: paperforge_version in envelope
2026-05-06 15:14:36 +08:00
Research Assistant
b8f2076e4d fix: maturity gauge string-blocker iteration, paper header sync, setup control_dir removal 2026-05-06 12:41:43 +08:00
Research Assistant
8ee73d8382 fix: BBT detection fallback to user-configured zotero_data_dir 2026-05-06 10:55:06 +08:00
Research Assistant
dac097c7e6 chore: cleanup stale files, update AGENTS.md, fix install wizard button crash
- Remove root setup_wizard.py (duplicate of paperforge/setup_wizard.py)
- Remove token-usage-output.txt (runtime artifact)
- Update AGENTS.md: worker architecture, directory structure, section numbering, test count 317->462
- Fix undefined 'home' variable in plugin main.js _preCheck causing modal to silently fail
2026-05-06 10:41:11 +08:00
Research Assistant
11e4ee8ee9 feat(30-01): replace _renderCollectionMode placeholder with full collection view
- Metric cards row: papers count, fulltext-ready (with progress bar), deep-read (with progress bar)
- Lifecycle distribution bar chart via _renderBarChart()
- Aggregated health overview via _renderCollectionHealth() showing PDF/OCR/Note/Asset counts
- Single-pass aggregation from domain-filtered canonical index entries
- Empty state via _renderEmptyState() when domain has no items
2026-05-04 22:01:02 +08:00
Research Assistant
6e1519f9db style(30-01): add Section 17 CSS for collection view layout
- .paperforge-collection-view flex container
- .paperforge-collection-metrics grid for metric cards
- .paperforge-collection-health grid for health aggregation
- .paperforge-collection-health-cell/counts with ok/warn/fail coloring
2026-05-04 21:59:58 +08:00
Research Assistant
5fe5b00c98 feat(29-01): implement _renderPaperMode with lifecycle stepper, health matrix, maturity gauge, next-step card
- Replace placeholder _renderPaperMode() with full per-paper view rendering pipeline
- Add _renderNextStepCard() with 6-state stepInfo mapping (sync/ocr/repair/rebuild index/pf-deep/ready)
- Add _openFulltext() using Obsidian vault API to open fulltext.md
- Paper metadata header shows title, authors (comma-joined), year
- Contextual action buttons: Copy Context (reuses ACTIONS), Open Fulltext (conditional on fulltext_path)
- All 4 Phase 27 component methods wired: lifecycle stepper, health matrix, maturity gauge, next-step card
2026-05-04 16:17:37 +08:00
Research Assistant
dbf76d1a0f style(29-01): add per-paper view CSS and next-step card styles
- Section 15: Per-Paper View Layout (paper-view, header, title, meta, authors, year, actions, contextual-btn)
- Section 16: Next-Step Recommendation Card (next-step-card with ready state, label, text, trigger button)
2026-05-04 16:17:31 +08:00