Research Assistant
eb3b73ae78
docs: prune superseded OCR worktree plans
2026-06-09 12:55:05 +08:00
Research Assistant
0aab860cf2
feat: OCR risk convergence — scored figure/table matching, layout confidence, insert scorer, health uncertainty metrics
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- Figure matching: nearest-asset → scored multi-candidate selection with ambiguous state
- Table matching: vertical-nearest → score-based selection with prev/next page window
- Layout confidence: PageLayoutProfile gains confidence/evidence; eligible-body block filter
- Tail reorder: guarded by layout + tail confidence (low confidence preserves raw order)
- Structured insert: direct promotion → scorer + candidate + fallback state
- Health: adds 14 uncertainty metrics (ambiguous matches, unresolved clusters, forced inserts, low tail confidence)
- Audit: docs/ocr/high-risk-rule-audit.md documents 8 hard-rule decisions mapped to plans
- Spec + 6 implementation plans for agentic execution
2026-06-08 13:43:48 +08:00
Research Assistant
c974ba7480
fix: remove open-ended authors text heuristics, anchor to page-1 zone only
2026-06-06 13:28:46 +08:00
Research Assistant
43087401c1
docs: mark completed tasks in document analysis plan, keep only delta tasks
2026-06-06 12:23:08 +08:00
Research Assistant
687332d126
docs: correct span_metadata source to PDF (not PaddleOCR), revise plan
2026-06-06 11:42:14 +08:00
Research Assistant
bdb3eae8ac
docs: add unified span metadata spec and integration plan
2026-06-06 11:06:39 +08:00
Research Assistant
7c278fbc60
fix(ocr): properly cluster multi-panel figures — role assignment, cluster bbox crop, render visibility
2026-06-06 10:08:42 +08:00
Research Assistant
c235dbdc68
feat(ocr): journal layout generalization, OCR diagnostics, and debug scripts
2026-06-06 00:46:49 +08:00
Research Assistant
f9b5fb0541
feat(ocr): journal layout generalization — structured boundary, container regime, legend validation
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- Task 1: TailBoundary namedtuple with body_end/backmatter_start/references_start
- Task 2: _classify_backmatter_form — 'container' (PeerJ) vs 'flat' (Frontiers) regime
- Task 3: _attach_container_bodies, _container_child flag for ### child headings
- Task 4: Style-family classification already complete
- Task 6: _is_formal_legend threshold raised to 100, more axis_words added,
low-confidence fallback with legend_uncertain flag for rejected captions
- 2GN9LMCW: authors correct, furniture suppressed, heading hierarchy,
container child headings, Figure 4 uncertain
- 7C8829BD: 26/26 markers, correct tail order, no regression
- 296/296 tests pass
2026-06-05 23:48:56 +08:00
Research Assistant
d52ea37e92
feat(ocr): tail regime remediation + style-aware heading profiles + boundary detection
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- Task: Bidirectional body/backmatter boundary detection (forward/backward spine + tail spread reconciliation)
- Task: Style-aware heading profiles from PDF span_metadata (extract, cluster, disambiguate)
- Task: Lock tests for tail-candidate overreach, cross-page continuation, style-aware heading detection
- 296/296 tests pass, real-paper 7C8829BD verified
2026-06-05 22:47:13 +08:00
Research Assistant
1779b8b0ff
docs: add legacy OCR backfill and sync integration plan
2026-06-05 12:49:01 +08:00
Research Assistant
5f31d2924f
docs: add OCR phase4.1 cleanup and phase5 plan
2026-06-05 12:00:22 +08:00
Research Assistant
f3fe86038e
docs: add OCR structured pipeline phase4 plan
2026-06-05 10:56:54 +08:00
Research Assistant
1963a091fc
docs: add OCR structured pipeline phase3 plan
2026-06-05 01:01:50 +08:00
Research Assistant
cca983d517
docs: add OCR structured pipeline phase2 plan
2026-06-04 23:44:12 +08:00
Research Assistant
feb6129cd2
docs: add OCR structured pipeline phase1 plan
2026-06-04 22:49:01 +08:00
Research Assistant
bef8360cbd
docs: add OCR structured pipeline design spec
2026-06-04 22:41:52 +08:00
Research Assistant
2ab524aecf
feat: ocr reading-order fixes, single-source fulltext, redo closed-loop, release notes & manual
2026-06-01 18:12:31 +08:00
Research Assistant
03ad9ce64f
feat: stabilize paperforge query planning
2026-05-27 21:20:15 +08:00
Research Assistant
3619fe264f
Revert "test: clean up brittle and low-value tests"
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This reverts commit 5ad9a54a66
2026-05-24 19:59:24 +08:00
Research Assistant
5ad9a54a66
test: clean up brittle and low-value tests
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- Remove 4 broken Python test files (ld_deep x3, path_normalization)
- Fix 2 vector_db tests to use correct mock target (get_collection)
- Remove 2 JS test files (settings-panels, vector-ready — trivial)
- Trim 3 buildRuntimeInstallCommand tests from errors.test.ts
- Narrow CI unit-tests to only run tests/unit/ (gate-level)
2026-05-24 19:59:14 +08:00
Research Assistant
51e78676e9
chore(plugin): finalize TS migration -- delete legacy testable.js
2026-05-24 17:33:22 +08:00
Research Assistant
1b0aecf48e
docs: add pdf annotation layer design spec and implementation plan
2026-05-20 15:33:13 +08:00
Research Assistant
cc5fa0658f
fix: add return type annotation to main() and indent=2 to early-exit json.dump calls
2026-05-19 14:41:06 +08:00
Research Assistant
19c28a8b91
chore: commit session work before hotfix switch
2026-05-18 22:47:30 +08:00
Research Assistant
add220d93c
feat(discussion): remove JSON output and markdown escaping
2026-05-18 21:09:54 +08:00
Research Assistant
d5956ec5b1
docs: v3 — snapshot mandate, degradation policy, first-launch migration, async refresh
2026-05-15 22:31:37 +08:00
Research Assistant
cfcc7fc471
docs: revise JS-first memory state — Python writes snapshots, JS reads files only
2026-05-15 22:24:26 +08:00
Research Assistant
e528a4eb7f
docs: JS-native memory state — spec, plan, and UX audit
2026-05-15 22:11:45 +08:00
Research Assistant
075c9107bf
docs: add memory runtime health spec and regression helpers
2026-05-15 01:29:54 +08:00
Research Assistant
28562811b1
chore: restore manifest version to match __init__ (1.5.6rc3)
2026-05-15 00:39:12 +08:00
Research Assistant
80db051d8c
fix: add --resume CLI arg and get_collection import for embed build
2026-05-15 00:16:06 +08:00
Research Assistant
fb02280a7d
spec: remove copy icon — clean click-to-copy with dashed underline only
2026-05-14 01:31:43 +08:00
Research Assistant
1e1acb2e82
spec: dashboard copy interaction + per-paper metadata enhancement
2026-05-14 01:21:52 +08:00
Research Assistant
8351319bcb
docs(spec): 10-point memory layer performance optimization
2026-05-13 16:52:10 +08:00
Research Assistant
aa4c4991fd
docs(spec): log format validation, reading-log import/lookup, methodology skill, dashboard SQLite
2026-05-13 16:02:50 +08:00
Research Assistant
8d3e4432c3
chore: add pre-commit JS syntax hook + stage missing vector CLI files
2026-05-12 23:34:24 +08:00
Research Assistant
9a48784b90
docs(spec): add Phase 7 vector retrieval — ChromaDB + local/API embedding + chunking
2026-05-12 21:43:34 +08:00
Research Assistant
55b5191d86
fix(spec): add DEFAULT_SETTINGS whitelist note, source: paperforge requirement, CLI toggle read
2026-05-12 21:19:21 +08:00
Research Assistant
85e35b0cfa
docs(spec): plugin settings redesign — tabbed UI, skill manager, feature toggles, vector DB panel
2026-05-12 21:11:15 +08:00
Research Assistant
a886c9111d
docs(spec): add Phase 6 — paper_events, reading/working logs, vector retrieval
2026-05-12 20:48:09 +08:00
Research Assistant
9dbdeaad46
test(memory): verify agent-context on test vault — 150 papers, 26 collections, 4 rules
2026-05-12 20:00:16 +08:00
Research Assistant
ad6812626e
docs(plan): add agent-context implementation plan
2026-05-12 19:54:19 +08:00
Research Assistant
50f71a82ee
docs(spec): add Memory Layer Phase 2-5 design (agent-context, dashboard, refresh, retrieve)
2026-05-12 19:44:38 +08:00
Research Assistant
8335bce992
bump: 1.5.5 -> 1.5.6rc1 (Memory Layer RC1)
2026-05-12 18:11:37 +08:00
Research Assistant
f244f72056
feat: restructure literature-qa v2 — SKILL.md as central hub with decision tree, add multi-reading, simplify refs
2026-05-11 23:58:46 +08:00
Research Assistant
fd0c25d608
fix(literature-qa): prohibit hardcoded path construction in skill references
2026-05-11 23:17:05 +08:00
Research Assistant
2e0657479a
feat: PyPI publish support — install paperforge from PyPI with git fallback
2026-05-11 18:04:17 +08:00
Research Assistant
566697fc31
chore: remove CI workflows pending rewrite
2026-05-11 17:00:23 +08:00
Research Assistant
30f9613482
merge: integrate dashboard-refine (deep-finalize + slug-freeze) into skill-refine
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Resolved conflicts:
- styles.css: take dashboard-refine (more refined CSS)
- SKILL.md, deep-reading.md, paper-resolution.md: take skill-refine (modular skill redesign)
2026-05-10 23:28:13 +08:00
