Commit graph

15 commits

Author SHA1 Message Date
Research Assistant
6052c823e6 Add run_repair() function for three-way OCR state divergence repair 2026-04-24 00:02:32 +08:00
Research Assistant
1d8478ce9c fix(wizard): auto-run pip install -e . and improve UX flow
- setup_wizard.py: _deploy() now calls pip install -e <repo_root> automatically
- DoneStep: removes manual 'pip install -e .' instruction (wizard handles it)
- README.md: removes separate pip install -r requirements.txt step
- docs/INSTALLATION.md: same pip install simplification
- pyproject.toml: add pytest ignore for nested sandbox vault
- tests/sandbox/: remove old vault/ (replaced by 00_TestVault/)
- tests/sandbox/README.md: update flow, wizard handles pip install
2026-04-23 20:49:10 +08:00
Research Assistant
b9f06ccad3 feat: complete PaperForge Lite v1.0 release hardening (5 phases, 28 reqs, 145 tests) 2026-04-23 20:15:20 +08:00
Research Assistant
51d35d6999 feat(01-04): replace unresolved path-token commands with stable paperforge commands
- command/lp-*.md: replace python <system_dir>/... with paperforge status|selection-sync|index-refresh|ocr run; add fallback legacy command section
- command/ld-deep.md: update queue preflight to 'paperforge deep-reading'; add paperforge paths --json for variable resolution
- README.md: update core commands section to show paperforge first, legacy as fallback
- docs/INSTALLATION.md: add paperforge paths/status as primary verification
- docs/setup-guide.md: replace python pipeline/worker/... with paperforge selection-sync/index-refresh
- setup_wizard.py DoneStep: add pip install -e . and paperforge commands as primary next steps

All 15 tests in tests/test_command_docs.py pass.
2026-04-23 11:40:24 +08:00
Research Assistant
881457dd92 Fix configurable Lite setup paths 2026-04-23 01:44:13 +08:00
Research Assistant
fd7ccb53fc fix: unify PaddleOCR env var names to match pipeline expectations (API_TOKEN/JOB_URL) 2026-04-23 00:57:48 +08:00
Research Assistant
d72bf76f08 docs: update README and INSTALLATION for wizard-based setup 2026-04-22 23:36:26 +08:00
Research Assistant
89374cb35f remove: all 科研读图指南 and Template references from project 2026-04-22 23:20:49 +08:00
Research Assistant
c607dd0441 rename: LiteraturePipeline -> PaperForge in all paths and references 2026-04-22 22:10:16 +08:00
Research Assistant
cea8046c30 feat: rewrite setup wizard as step-by-step guide with screenshots 2026-04-22 20:20:45 +08:00
Research Assistant
eafbab7594 feat: add TUI setup wizard and setup guide
- Add setup_wizard.py: Textual TUI with checklist + guide
  - Detects: Python, Vault structure, Zotero, Better BibTeX, JSON exports
  - Blocked guide until all checks pass
  - Open local docs/setup-guide.md from TUI
- Add docs/setup-guide.md: Detailed text-based setup instructions
  - Menu path diagrams for Zotero/BBT configuration
  - JSON-to-Base relationship explanation
  - FAQ section
- Integrate 'wizard' command into literature_pipeline.py
2026-04-22 19:28:52 +08:00
Research Assistant
f3b79cd678 docs: remove outdated audit and modular design docs 2026-04-21 23:56:45 +08:00
Research Assistant
b68804f89d docs: add modular installation architecture design 2026-04-21 22:12:48 +08:00
PaperForge Assistant
9cadab68ad fix(setup): resolve all audit findings 2026-04-21 22:10:40 +08:00
Research Assistant
35b18c6b97 Initial commit: Literature workflow for medical research 2026-04-21 20:50:17 +08:00