Commit graph

14 commits

Author SHA1 Message Date
Research Assistant
ebc4fdeb00 chore: rename PaperForge Lite -> PaperForge across 27 files 2026-04-28 01:25:51 +08:00
Research Assistant
bcd0934117 docs: sync all doc references — README, INSTALLATION.md, AGENTS.md for v1.4.1 pip-first flow 2026-04-28 01:06:58 +08:00
Research Assistant
67a52a898a fix: VaultStep.__init__ missing step_id and checker in super() call 2026-04-27 19:49:36 +08:00
Research Assistant
62ec89441c docs(09-command-unification): update user-facing docs for unified commands
- Replace paperforge selection-sync/index-refresh with paperforge sync
- Replace paperforge ocr run with paperforge ocr
- Replace /LD-deep, /LD-paper with /pf-deep, /pf-paper
- Add v1.1 -> v1.2 command migration table to AGENTS.md
- Update README.md, docs/INSTALLATION.md, docs/setup-guide.md
2026-04-24 16:56:39 +08:00
Research Assistant
3ac9b8a323 docs(phase-9): update all markdown references to paperforge
- Updated 91 files: paperforge_lite → paperforge
- Includes: AGENTS.md, README.md, docs/, command/, skills/, .planning/
- Preserved historical records in Phase 1 artifacts
2026-04-24 16:15:38 +08:00
Research Assistant
6052c823e6 Add run_repair() function for three-way OCR state divergence repair 2026-04-24 00:02:32 +08:00
Research Assistant
1d8478ce9c fix(wizard): auto-run pip install -e . and improve UX flow
- setup_wizard.py: _deploy() now calls pip install -e <repo_root> automatically
- DoneStep: removes manual 'pip install -e .' instruction (wizard handles it)
- README.md: removes separate pip install -r requirements.txt step
- docs/INSTALLATION.md: same pip install simplification
- pyproject.toml: add pytest ignore for nested sandbox vault
- tests/sandbox/: remove old vault/ (replaced by 00_TestVault/)
- tests/sandbox/README.md: update flow, wizard handles pip install
2026-04-23 20:49:10 +08:00
Research Assistant
51d35d6999 feat(01-04): replace unresolved path-token commands with stable paperforge commands
- command/lp-*.md: replace python <system_dir>/... with paperforge status|selection-sync|index-refresh|ocr run; add fallback legacy command section
- command/ld-deep.md: update queue preflight to 'paperforge deep-reading'; add paperforge paths --json for variable resolution
- README.md: update core commands section to show paperforge first, legacy as fallback
- docs/INSTALLATION.md: add paperforge paths/status as primary verification
- docs/setup-guide.md: replace python pipeline/worker/... with paperforge selection-sync/index-refresh
- setup_wizard.py DoneStep: add pip install -e . and paperforge commands as primary next steps

All 15 tests in tests/test_command_docs.py pass.
2026-04-23 11:40:24 +08:00
Research Assistant
881457dd92 Fix configurable Lite setup paths 2026-04-23 01:44:13 +08:00
Research Assistant
fd7ccb53fc fix: unify PaddleOCR env var names to match pipeline expectations (API_TOKEN/JOB_URL) 2026-04-23 00:57:48 +08:00
Research Assistant
d72bf76f08 docs: update README and INSTALLATION for wizard-based setup 2026-04-22 23:36:26 +08:00
Research Assistant
89374cb35f remove: all 科研读图指南 and Template references from project 2026-04-22 23:20:49 +08:00
Research Assistant
c607dd0441 rename: LiteraturePipeline -> PaperForge in all paths and references 2026-04-22 22:10:16 +08:00
Research Assistant
35b18c6b97 Initial commit: Literature workflow for medical research 2026-04-21 20:50:17 +08:00