Research Assistant
a38e41ba78
test: lock OCR phase2 figure inventory contract
2026-06-05 00:08:30 +08:00
Research Assistant
8cc493967e
fix: add ocr_redo to expected frontmatter fields in test
2026-06-01 11:25:24 +08:00
Research Assistant
3d820ad5c9
fix(sync): avoid prune crash when optional deps are missing
2026-05-31 20:55:17 +08:00
Research Assistant
49a8c307c1
test: cover preserved frontmatter tags
2026-05-31 19:52:37 +08:00
Research Assistant
15bf3c6529
test: clean up brittle and low-value tests
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- Remove 4 broken Python test files (ld_deep x3, path_normalization)
- Fix 2 vector_db tests to mock get_collection instead of chromadb.PersistentClient
- Remove 2 JS test files (settings-panels, vector-ready — trivial)
- Trim 3 buildRuntimeInstallCommand tests from errors.test.ts
- Narrow CI unit-tests to only run tests/unit/ (gate-level)
2026-05-24 20:00:47 +08:00
Research Assistant
3619fe264f
Revert "test: clean up brittle and low-value tests"
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This reverts commit 5ad9a54a66
2026-05-24 19:59:24 +08:00
Research Assistant
5ad9a54a66
test: clean up brittle and low-value tests
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- Remove 4 broken Python test files (ld_deep x3, path_normalization)
- Fix 2 vector_db tests to use correct mock target (get_collection)
- Remove 2 JS test files (settings-panels, vector-ready — trivial)
- Trim 3 buildRuntimeInstallCommand tests from errors.test.ts
- Narrow CI unit-tests to only run tests/unit/ (gate-level)
2026-05-24 19:59:14 +08:00
Research Assistant
cc5fa0658f
fix: add return type annotation to main() and indent=2 to early-exit json.dump calls
2026-05-19 14:41:06 +08:00
Research Assistant
02ef2d9b52
feat(sync): auto-detect orphan papers after sync, show modal in Obsidian
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- prune.py: _enrich_orphan_preview() reads note frontmatter for metadata
- sync_service.py: always run dry-run prune, include in result
- sync.py: write sync-orphan-state.json for plugin consumption
- main.js: add checkOrphanState() + PaperForgeOrphanModal with select/toggle
- styles.css: orphan modal styles (list, tags, dimmed rows)
- cli.py: add --keys to prune command for targeted deletion
2026-05-19 00:31:19 +08:00
Research Assistant
e2068d2172
test(prune): add SyncService prune integration tests
2026-05-18 21:58:57 +08:00
Research Assistant
63705b4103
fix(prune): protect dir iteration, add OSError handling, improve test coverage
2026-05-18 21:53:14 +08:00
Research Assistant
6facabc8aa
feat(prune): core orphan paper cleanup module
2026-05-18 21:48:18 +08:00
Research Assistant
a599cd930b
Merge branch 'paperforge-stabilization'
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# Conflicts:
# paperforge/memory/vector_db.py
2026-05-18 18:47:07 +08:00
Research Assistant
a50a1510bd
fix(test): correct patch target in test_retrieve — must patch embedding.get_embed_status, not status.get_embed_status, because retrieve.py imports from __init__ re-export
2026-05-18 17:38:23 +08:00
Research Assistant
a3e8a6e816
test: update vector_db test imports to embedding package
2026-05-18 17:23:37 +08:00
Research Assistant
2b552be9e6
feat: runtime contract hardening + skill/command truth alignment (Package A+B)
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Atomic snapshots, canonical index mutation serialization, sync post-clean truth,
plugin path config-awareness, embed stop signal honesty, full snapshot bootstrap,
pf_ prefix unification, workflow command/lifecycle/path corrections,
mechanical/cognitive route separation with unknown-command guard.
2026-05-16 22:38:43 +08:00
Research Assistant
245d09e383
feat: add runtime-health CLI command
2026-05-15 01:16:16 +08:00
Research Assistant
fe33470303
feat: add layered runtime health computation
2026-05-15 01:15:39 +08:00
Research Assistant
b21c339227
feat: persist embed lifecycle and add stop command
2026-05-15 01:15:07 +08:00
Research Assistant
64ee50a080
feat: add persistent vector build state helpers
2026-05-15 01:13:12 +08:00
Research Assistant
fd7f7f3278
perf: refresh_paper accepts entry dict, skip full index read
2026-05-13 16:58:39 +08:00
Research Assistant
1ae7e074d8
feat(memory): dashboard reads from SQLite + incremental refresh_paper()
2026-05-12 20:08:46 +08:00
Research Assistant
b7530d5dee
feat(memory): add agent context query module
2026-05-12 19:55:58 +08:00
Research Assistant
80d76e6ac2
feat(frontmatter): add citation_key field and alias from BBT citationKey
2026-05-12 18:28:53 +08:00
Research Assistant
c100423353
feat(memory): add query module for paper lookup and status check
2026-05-12 17:47:30 +08:00
Research Assistant
1407e2606d
feat(memory): add builder module that populates SQLite from formal-library.json
2026-05-12 17:44:03 +08:00
Research Assistant
cf919d1801
feat(memory): add schema module with table definitions and tests
2026-05-12 17:40:10 +08:00
Research Assistant
9b88c441b0
refactor(skills): modular literature-qa skill with router-first architecture
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- Replace 6 scattered pf-*.md files with single SKILL.md router + 4 reference files
- Add paper_resolver.py: deterministic key/DOI/field search (4 subcommands)
- Remove pf-sync/ocr/status (CLI-only commands, no skill wrapper needed)
- Move chart-reading/ into references/ for flat structure
- Make ld_deep.py --vault optional (auto-detect from cwd)
- Add 26 unit tests for paper_resolver
- All paths dynamically resolved from paperforge.json, zero hardcoding
2026-05-10 20:56:28 +08:00
Research Assistant
05629bce82
refactor: v2.1 contract hardening — PFResult unification, ErrorCode expansion, adapter cleanup, SyncService orchestration
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Core contract:
- ErrorCode: 8→26 with _missing_() graceful degradation for unknown codes
- PFResult: +warnings/next_actions, PFError: +suggestions
- OcrStatus: 4→9 granular states (NONE/QUEUED/BLOCKED/NO_PDF/DONE_INCOMPLETE restored 1:1)
- field_registry.yaml: +owner/deprecated/replacement/enum values/default
Adapter cleanup:
- new core/io.py (read_json/write_json), core/date_utils.py (extract_year)
- new adapters/collections.py (build_collection_lookup)
- adapters/bbt.py: cut worker dependency, _private→public+alias
- worker/_utils.py + _domain.py: re-export from core instead of duplicate defs
Command unification:
- All 6 commands (sync/status/ocr/deep/repair/dashboard) → PFResult
- cli.py --json dest unified to 'json' (was json_output on status/doctor)
- commands/sync.py → SyncService (no more int/dict/PFResult mixing)
Service hardening:
- SyncService.run() orchestrates full sync lifecycle (select→index→clean)
- cleanup loops (orphaned records, flat notes) migrated from worker
- worker/sync.py: freeze line + services→worker one-way dependency
- plugin/main.js: formal-library.json fallback deprecation warning
Verification: 181/181 tests, 0 new lint errors
2026-05-09 22:20:07 +08:00
Research Assistant
b52046d209
fix: skip backslash path test on non-Windows (\\ is valid filename char on Linux)
2026-05-09 18:33:42 +08:00
Research Assistant
bbd39a90d3
v1.4.17rc4
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Milestone v2.1: Contract-Driven Architecture & Engineering Hardening
- Stop the Bleeding: version sync checker, PyYAML hardening, install docs unification
- Contract Layer: PFResult/PFError dataclasses, ErrorCode enum, --json wrapping
- Service Extraction: sync.py decomposed into 3 adapters + SyncService
- State Machine: PdfStatus/OcrStatus/Lifecycle enums, transitions, field registry
- Setup Modularization: setup_wizard.py decomposed into 6 classes
173 tests passing, 0 regressions.
2026-05-09 17:05:07 +08:00
