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28 commits

Author SHA1 Message Date
LLLin000
964e05b305 feat: Workstream A — OCR object writeback module 
- A0: extract post-inventory seam into ocr_object_writeback module
- A1: add ownership evidence contract + idempotency guard
- A2: claim side-adjacent figure text (M84CTEM9 fix)
 2026-07-04 13:16:37 +08:00
Research Assistant
eb070ae318 fix: project table note bands through object and render 2026-06-20 02:19:23 +08:00
Research Assistant
0e0a8463af fix: clean table projection and health heading semantics 2026-06-19 23:50:12 +08:00
Research Assistant
765cdf91f2 fix: carry owned table notes through rebuild outputs 2026-06-19 23:34:01 +08:00
Research Assistant
7f83affeea fix(ocr-render): remove internal reader_status labels from markdown output 
EXACT_MATCH, LEGEND_ONLY, ASSET_GROUP_ONLY are internal status
signals and should not leak into user-facing rendered fulltext.
 2026-06-14 20:56:37 +08:00
Research Assistant
f309c5e42d test: lock gap surface for closure remediation 2026-06-14 11:51:10 +08:00
Research Assistant
ab54d81caa docs: classify env-driven tests as audit-only, legacy renderer tests as diagnostic 2026-06-13 16:41:38 +08:00
Research Assistant
7b8ed4be0e fix: close OCR v2 real-paper structural, object, and render gaps 2026-06-12 17:41:57 +08:00
Research Assistant
e4d050c298 fix: close OCR v2 real-paper structural and object gaps 2026-06-12 17:24:57 +08:00
Research Assistant
669c3bfe07 fix: repair OCR renderer object emit and tail heading suppression 2026-06-12 16:52:32 +08:00
Research Assistant
31d7cad7c7 test: add missing plan-specified gate health and render tests 2026-06-12 15:21:14 +08:00
Research Assistant
d9f76917e9 style: ruff format after OCR role gate implementation 2026-06-12 15:11:33 +08:00
Research Assistant
4cbad1c943 fix: make OCR figure rendering reader-primary 
- Move consumed_caption_block_ids skip to top of block loop (before role
  dispatch) so body_paragraph / backmatter_body blocks with consumed
  captions are also skipped, not just figure_caption blocks.
- Create _emit_page_objects() helper to eliminate 4 duplicated page-
  emission loops. Reader figures are primary: when present, legacy
  matched_figures and unresolved_clusters are skipped for that page.
- Add tests: consumed-caption dedupe for body_paragraph, reader-figures-
  preferred-over-legacy-matched_figures.
 2026-06-11 14:16:28 +08:00
Research Assistant
3fdda60adf feat: render OCR reader figures without debug leakage 2026-06-10 20:47:25 +08:00
Research Assistant
adb33b2588 fix: honor OCR display and frontmatter authority in render 2026-06-10 13:13:59 +08:00
Research Assistant
0aab860cf2 feat: OCR risk convergence — scored figure/table matching, layout confidence, insert scorer, health uncertainty metrics 
- Figure matching: nearest-asset → scored multi-candidate selection with ambiguous state
- Table matching: vertical-nearest → score-based selection with prev/next page window
- Layout confidence: PageLayoutProfile gains confidence/evidence; eligible-body block filter
- Tail reorder: guarded by layout + tail confidence (low confidence preserves raw order)
- Structured insert: direct promotion → scorer + candidate + fallback state
- Health: adds 14 uncertainty metrics (ambiguous matches, unresolved clusters, forced inserts, low tail confidence)
- Audit: docs/ocr/high-risk-rule-audit.md documents 8 hard-rule decisions mapped to plans
- Spec + 6 implementation plans for agentic execution
 2026-06-08 13:43:48 +08:00
Research Assistant
64915aa3f2 fix(ocr): prevent empty wikilinks for unresolved clusters in renderer 2026-06-08 12:13:02 +08:00
Research Assistant
f9dff20cd8 feat: OCR complex layout and sidebar detection overhaul 
- Add RegionPrepass data model for frontmatter/structured_insert/body classification
- Add PDF visual container detection (filled rects) for sidebar detection
- Add Box N and keyword-based sidebar anchor detection
- Add column-aware block expansion for mixed sidebar clusters
- Add _container_text from PDF text blocks for cross-column truncation
- Add degraded-mode heading level normalization with font size clustering
- Merge adjacent structured_insert blocks into single callout
- Fix metadata enrichment from Literature-hub note frontmatter for old papers
- Fix heading hierarchy using span font-size clusters when available
- Add real-paper regression harness (TSCKAVIS, CAQNW9Q2, A8E7SRVS, K7R8PEKW)
- Add body retention, heading, metadata, and callout acceptance tests
- 219 passed, 4 control guards passed
 2026-06-07 21:35:57 +08:00
Research Assistant
7c278fbc60 fix(ocr): properly cluster multi-panel figures — role assignment, cluster bbox crop, render visibility 2026-06-06 10:08:42 +08:00
Research Assistant
c235dbdc68 feat(ocr): journal layout generalization, OCR diagnostics, and debug scripts 2026-06-06 00:46:49 +08:00
Research Assistant
d52ea37e92 feat(ocr): tail regime remediation + style-aware heading profiles + boundary detection 
- Task: Bidirectional body/backmatter boundary detection (forward/backward spine + tail spread reconciliation)
- Task: Style-aware heading profiles from PDF span_metadata (extract, cluster, disambiguate)
- Task: Lock tests for tail-candidate overreach, cross-page continuation, style-aware heading detection
- 296/296 tests pass, real-paper 7C8829BD verified
 2026-06-05 22:47:13 +08:00
Research Assistant
f3fec67469 test: lock OCR render stabilization regressions 2026-06-05 13:31:50 +08:00
Research Assistant
fd15d074c9 test: preserve OCR render regressions through structured renderer 2026-06-05 10:22:18 +08:00
Research Assistant
2ab524aecf feat: ocr reading-order fixes, single-source fulltext, redo closed-loop, release notes & manual 2026-06-01 18:12:31 +08:00
Research Assistant
37768d15be feat: add ocr_redo frontmatter field + sync preservation 2026-06-01 11:23:32 +08:00
Research Assistant
925b4d0957 test(ocr): add block order rendering regressions 2026-05-31 20:55:17 +08:00
Research Assistant
7eeaebdd81 test(merge-gate): add upgrade migration and index path integrity tests 
- test OCR state machine: isolate runtime (no ambient tokens), fix retry exhaustion and full cycle tests
- test migration: verify no-index flat note migration, legacy flag promotion including false overrides
- test migration: verify non-canonical filename migration via frontmatter title
- test migration: verify already-migrated workspace reconciliation from legacy records
- test asset_index: verify fulltext/deep-reading paths only advertised when files exist
 2026-05-07 21:52:16 +08:00
Research Assistant
4fe55e11dc feat: restore phases 31-34 from stash — dashboard multi-view, deep-reading mode, jump button, planning docs 
- Phase 31: Bug fixes (version display, lifecycle alignment, AI Ready removal)
- Phase 32: Deep-reading mode detection (_resolveModeForFile, identity guard)
- Phase 33: Deep-reading dashboard (status card, Pass 1 extraction, AI Q&A)
- Phase 34: Jump to deep reading button (i18n, conditional visibility)
- Planning files for phases 31-36
- CSS: Section 33 deep-reading styles
- asset_index.py: paperforge_version in envelope
 2026-05-06 15:14:36 +08:00