Research Assistant 463cd4d7b1 fix: references, figure matching, and OCR structural fixes ... - Fix references zone detection without heading (backward reference fallback) - Fix reference_item silently dropped in _reorder_tail_run_fifo when no heading - Fix figure proximity matching: use nearest legend regardless of column order - Fix figure numbering in extract_and_write_objects: use actual figure_id - Fix body→reference_item rescue: require text starts with numeric ref pattern - Fix tail reading order rebuilt after block normalization - A8E7SRVS: corrected figure-legend pairing on page 5 - CAQNW9Q2: references now render without heading - K7R8PEKW: adjusted body retention threshold		2026-06-07 22:27:58 +08:00
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__init__.py	feat(prune): core orphan paper cleanup module	2026-05-18 21:48:18 +08:00
_domain.py	chore: commit session work before hotfix switch	2026-05-18 22:47:30 +08:00
_progress.py	docs(v1.4): commit planning artifacts, test files, and phase summaries for phases 13-19	2026-04-27 19:12:03 +08:00
_retry.py	docs(v1.4): commit planning artifacts, test files, and phase summaries for phases 13-19	2026-04-27 19:12:03 +08:00
_utils.py	feat: ocr reading-order fixes, single-source fulltext, redo closed-loop, release notes & manual	2026-06-01 18:12:31 +08:00
asset_index.py	test: lock OCR phase2 figure inventory contract	2026-06-05 00:08:30 +08:00
asset_state.py	style: ruff format pass across paperforge/	2026-05-09 22:31:08 +08:00
base_views.py	feat: add ocr_time frontmatter field — tracks last OCR completion time, shown in 重做OCR view	2026-06-01 15:36:11 +08:00
deep_reading.py	test: lock OCR phase2 figure inventory contract	2026-06-05 00:08:30 +08:00
discussion.py	chore: commit session work before hotfix switch	2026-05-18 22:47:30 +08:00
ocr.py	feat: OCR complex layout and sidebar detection overhaul	2026-06-07 21:35:57 +08:00
ocr_artifacts.py	feat: classify OCR raw and derived version state	2026-06-05 11:14:24 +08:00
ocr_attach.py	feat: add OCR layered modules (roles, body spine, layout, attach)	2026-06-01 00:01:05 +08:00
ocr_blocks.py	feat: OCR complex layout and sidebar detection overhaul	2026-06-07 21:35:57 +08:00
ocr_document.py	fix: references, figure matching, and OCR structural fixes	2026-06-07 22:27:58 +08:00
ocr_emit.py	feat: add OCR emission layer and regression tests	2026-06-01 00:01:39 +08:00
ocr_evidence.py	feat: add OCR evidence objects and paper-context summary	2026-06-05 12:15:51 +08:00
ocr_figures.py	fix: references, figure matching, and OCR structural fixes	2026-06-07 22:27:58 +08:00
ocr_health.py	feat: OCR complex layout and sidebar detection overhaul	2026-06-07 21:35:57 +08:00
ocr_index.py	fix: stabilize legacy OCR structure and metadata recovery	2026-06-05 13:34:43 +08:00
ocr_layout.py	feat: add OCR layered modules (roles, body spine, layout, attach)	2026-06-01 00:01:05 +08:00
ocr_math.py	fix: add relational-operator spacing and Greek-letter preservation to math normalization	2026-06-06 17:19:33 +08:00
ocr_metadata.py	fix: anchor OCR frontmatter to source metadata	2026-06-07 15:58:38 +08:00
ocr_objects.py	fix: references, figure matching, and OCR structural fixes	2026-06-07 22:27:58 +08:00
ocr_orchestrator.py	refactor: replace dead reorder import with direct column-major fallback	2026-06-07 01:00:45 +08:00
ocr_pdf_spans.py	feat: OCR complex layout and sidebar detection overhaul	2026-06-07 21:35:57 +08:00
ocr_profiles.py	feat: derive section family profiles from normalized OCR structure	2026-06-06 15:49:50 +08:00
ocr_rebuild.py	feat: OCR complex layout and sidebar detection overhaul	2026-06-07 21:35:57 +08:00
ocr_render.py	fix: references, figure matching, and OCR structural fixes	2026-06-07 22:27:58 +08:00
ocr_roles.py	feat: OCR complex layout and sidebar detection overhaul	2026-06-07 21:35:57 +08:00
ocr_tables.py	feat(ocr): tail regime remediation + style-aware heading profiles + boundary detection	2026-06-05 22:47:13 +08:00
ocr_versions.py	style: fix lint issues in legacy backfill code	2026-06-05 13:01:55 +08:00
paper_meta.py	chore: commit session work before hotfix switch	2026-05-18 22:47:30 +08:00
paper_resolver.py	chore: commit session work before hotfix switch	2026-05-18 22:47:30 +08:00
prune.py	fix(sync): avoid prune crash when optional deps are missing	2026-05-31 20:55:17 +08:00
repair.py	chore: commit session work before hotfix switch	2026-05-18 22:47:30 +08:00
status.py	feat: surface legacy OCR backfill state in doctor and status diagnostics	2026-06-05 13:00:35 +08:00
sync.py	feat: ocr reading-order fixes, single-source fulltext, redo closed-loop, release notes & manual	2026-06-01 18:12:31 +08:00
update.py	chore: commit session work before hotfix switch	2026-05-18 22:47:30 +08:00
vector_db.py	chore: commit session work before hotfix switch	2026-05-18 22:47:30 +08:00