LLLin000 906b3cafc0 fixup: headless via SetupPlan only, ConfigWriter always schema_version 2 ... - Removed headless_setup call from CLI dispatch entirely. --headless, --modular, and bare all construct the same SetupPlan with identical _cfg/zotero_path/agent_type/skip_checks. Only the deprecation notice differs per entry point. - Added skip_checks parameter to SetupPlan (forwarded to CLI arg). - ConfigWriter always writes schema_version '2' unconditionally (never preserves a v1 value from existing config). RED commands: python -m pytest tests/test_setup_plan_v2.py::TestConfigWriterSchemaVersion -v python -m pytest tests/test_setup_plan_v2.py::TestCliHeadlessViaSetupPlan -v GREEN commands (same, after fixes): 61/61 passed.		2026-07-15 02:23:46 +08:00
..
__init__.py	style: ruff format pass across paperforge/	2026-05-09 22:31:08 +08:00
agent.py	refactor: unify skills into paperforge compound skill (6 workflows)	2026-05-14 17:56:25 +08:00
checker.py	chore: commit session work before hotfix switch	2026-05-18 22:47:30 +08:00
config_writer.py	fixup: headless via SetupPlan only, ConfigWriter always schema_version 2	2026-07-15 02:23:46 +08:00
plan.py	fixup: headless via SetupPlan only, ConfigWriter always schema_version 2	2026-07-15 02:23:46 +08:00
runtime.py	fix: remove v prefix from git tag references in install URLs; update versions.json	2026-05-25 11:45:11 +08:00
vault.py	fix(skill): split vault-browse from paper-search, add browsing flow to vault-knowledge	2026-05-11 19:03:38 +08:00