Commit graph

18 commits

Author SHA1 Message Date
Zero Liu
6ca2dc01ea
chore(eslint): enable no-explicit-any; fix ~395 violations (#2452)
* chore(eslint): enable no-explicit-any; fix ~395 violations

Switches @typescript-eslint/no-explicit-any from "off" to "error" and
replaces explicit `any` with proper types or `unknown` + narrowing
across ~100 source files and 15 test files. Eleven eslint-disable
comments remain: one for a BaseLanguageModel prototype patch and ten
for Orama<any> API surfaces where typed alternatives poison Orama's
internal inference to `never`.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(scripts): cast chainContext to ChainManager in printPromptDebugEntry

The earlier `as any` → `as unknown` rewrite left buildAgentPromptDebugReport's
chainManager argument typed as `unknown`, which CI's `tsc -noEmit` (without
`--skipLibCheck`) flagged. Restore the cast through the real ChainManager type.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* chore(eslint): fix remaining no-explicit-any and unnecessary-type-assertion errors

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* chore(eslint): drop redundant no-explicit-any rule

Already set to "error" by typescript-eslint/recommendedTypeChecked via
obsidianmd's recommended config.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-14 02:08:45 -07:00
Zero Liu
e3c5e24f1b
chore(eslint): enable @typescript-eslint/no-unsafe-return and fix violations (#2436)
Moves the rule into the TS-only config block (the plugin is only registered
for .ts/.tsx). Fixes 187 violations across 74 files using narrow `as` casts,
explicit return-type annotations on callbacks, typed intermediate variables,
and tightening parameter types from `any` to `unknown` where it didn't break
callers. Also replaces the `@ts-ignore`'d `Electron.SafeStorage` reference
with a local `SafeStorage` interface in `encryptionService.ts`. No prompt
content modified; no `eslint-disable` comments added.

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-13 22:04:59 -07:00
Zero Liu
6331631dd0
chore(popout): window-global API swaps — timers, globalThis, base64 (W3/9) (#2401)
Fourth of nine workspaces splitting #2397. Mechanical swaps to
window-namespaced globals for Obsidian popout window compatibility.
No semantic behavior change beyond "works correctly in a popout."

- setTimeout / clearTimeout / setInterval / clearInterval /
  requestAnimationFrame → window.* across all callsites
- globalThis → window (BedrockChatModel fetch.bind, scattered sites)
- atob / btoa → Buffer.from(..., 'base64') / Buffer.from(...).toString('base64')
  - src/encryptionService.ts (drops Node 'buffer' import; Buffer is global)
  - src/utils.ts safeFetch arrayBuffer() branch
  - src/LLMProviders/BedrockChatModel.ts decodeBase64ToUint8Array

Builds on top of #2398 (W0 — deps bump).

Co-authored-by: Claude Opus 4.7 <noreply@anthropic.com>
2026-05-12 22:24:17 -07:00
Wenzheng Jiang
d308423315
Composer V2: Replace replaceInFile with editFile as the primary targeted-edit tool (#2305)
* feat(editFile): write-first with inline diff in chat

Replace the blocking accept/reject modal in editFile with a write-first
approach: changes are written to disk immediately, and a unified diff is
returned inline in the chat as a fenced \`\`\`diff block. Multiple
editFile calls in a single agent turn each produce their own diff
without requiring any user interaction.

Also cleans up associated rename/refactor of writeToFileTool →
writeFileTool across chain runner, streamer, and related tests.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(editFile): add Show Diff button and side-by-side diff view in ApplyView

- Pipe editFileDiffs through message types (ChatMessage, StoredMessage) and
  MessageRepository so writeFile/editFile diffs are stored as a typed field
  (same pattern as sources)
- Collect diffs in AutonomousAgentChainRunner.runReActLoop() by parsing the
  JSON result of successful writeFile/editFile tool calls, then pass through
  ReActLoopResult → handleResponse() → ChatMessage.editFileDiffs
- ChatSingleMessage reads message.editFileDiffs directly (instead of trying
  to parse TOOL_CALL markers which don't exist in agent mode)
- ChatButtons shows a "Show diff" button when editFileDiffs is present;
  clicking it opens ApplyView for each diff
- ApplyView redesigned: renders change blocks side-by-side (original left
  with red highlights, modified right with green highlights) using the
  SideBySideBlock component, unchanged blocks shown as plain text between
  change blocks — restores the classic diff block presentation

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* Revert "feat(editFile): add Show Diff button and side-by-side diff view in ApplyView"

This reverts commit 80945493b48d50c26b9a01bc40de5eced2fcfd18.

* feat(editFile): show ApplyView with simple mode (no per-block buttons)

- editFile now shows the Apply View preview and blocks until user accepts/rejects
- Respects autoAcceptEdits setting (bypasses preview when enabled)
- Adds `simple` flag to ApplyViewState to hide per-block accept/reject/revert buttons
- Removes unused createPatch import

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(tools): update writeFile description to "Create or rewrite files in your vault"

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix: address Codex review — GPT prompt, fuzzy match safety, tool ID migration

- modelAdapter: update GPT prompt to use editFile's oldText/newText params
  instead of the old SEARCH/REPLACE block syntax
- ComposerTools: fix fuzzy match to replace only the matched span in the
  original content; previously the entire file was rebuilt from the
  fuzzy-normalized string, inadvertently applying trimEnd and quote/dash
  normalization to text outside the matched span
- settings/model: migrate persisted autonomousAgentEnabledToolIds from
  writeToFile→writeFile and replaceInFile→editFile on upgrade

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* test(editFile): add unit tests for fuzzy match via applyEditToContent

Extract pure replacement logic into applyEditToContent() for testability,
then wire editFileTool.func to call it (removes duplicated logic).

Tests cover:
- Exact match: basic replacement, deletion, NOT_FOUND, AMBIGUOUS
- Fuzzy via smart quotes (single, double), en-dash, NBSP
- Fuzzy via trailing whitespace (spaces, tabs)
- Key invariant: fuzzy match only replaces the matched span — smart quotes
  and trailing spaces outside the span are left untouched
- Multiline fuzzy match with mixed artifacts
- CRLF and LF preservation
- BOM preservation

Also fixes mapFuzzyIndexToNormal to extend matchEnd to the full original
line length when the fuzzy match ends at end-of-line, preventing orphaned
trailing whitespace after replacement.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix: address Codex review — NFKC position mapping and legacy tag compat

- ComposerTools: fix mapFuzzyIndexToNormal to handle NFKC expansion
  (e.g. Ⅳ → IV) by walking char-by-char within each line instead of
  assuming a 1:1 column mapping; adds two unit tests covering this case
- ChatSingleMessage: normalise legacy <writeToFile> tags to <writeFile>
  before rendering so saved chat history from before the tool rename
  continues to display correctly

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* test(modelAdapter): update assertions for editFile oldText/newText prompt

Replace stale SEARCH/REPLACE references with the new parameter names.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* refactor(editFile): replace sentinel strings with ApplyEditResult discriminated union

- `applyEditToContent` now returns `{ ok: true; content: string } | { ok: false; reason: 'NOT_FOUND' } | { ok: false; reason: 'AMBIGUOUS'; occurrences: number }` instead of raw sentinel strings, eliminating false positives when file content matches 'NOT_FOUND' or starts with 'AMBIGUOUS:'
- Update `editFileTool` to pattern-match on the discriminated union
- Update `cleanMessageForCopy` regexes to also strip legacy `<writeToFile>` tags from saved chat history
- Update all `applyEditToContent` test assertions to use the new structured return type

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(editFile): sanitize file path before vault lookup

Apply `sanitizeFilePath` in `editFileTool` to match the same treatment
`writeFileTool` already does, preventing "File not found" failures when
the path has a basename that exceeds 255 bytes.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(editFile): guard against degenerate fuzzy match inside NFKC expansion

When `oldText` fuzzy-matches a span whose boundaries both map to the same
position in the original (e.g. searching "I" inside fuzzy "IV" derived from
"Ⅳ"), `matchStart >= matchEnd` and the replacement would be zero-width or
corrupt. Return NOT_FOUND instead of silently producing a wrong edit.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(builtinTools): remove invalid daily:append/daily:prepend from prompt

The obsidianDailyNote tool schema only accepts 'daily', 'daily:read', and
'daily:path'. The prompt was incorrectly advertising non-existent
daily:append and daily:prepend commands, which would cause LLM-generated
tool calls to fail schema validation.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(editFile): add Stage 3 to tolerate trailing newline mismatch at EOF

LLMs frequently append \n to the last line of oldText even when the file
has no final newline. Neither exact nor fuzzy match would find this, causing
avoidable NOT_FOUND failures. Stage 3 retries with one trailing \n stripped
from oldText (and mirrors the trim on newText to preserve the file's
no-trailing-newline format).

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(tests): update editFile integration test to oldText/newText shape

The argumentValidator was still asserting the legacy args.diff SEARCH/REPLACE
payload. Updated to check args.oldText and args.newText to match the new
editFile tool contract.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(editFile): count overlapping matches to prevent wrong-location edits

countOccurrences was advancing by searchText.length, so overlapping patterns
like "aba" in "ababa" were counted as 1 (non-overlapping) instead of 2. This
caused an ambiguous match to be silently applied at the first position rather
than returning AMBIGUOUS. Advance by 1 to catch all overlapping occurrences.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(editFile): round-trip check guards partial NFKC-expansion fuzzy matches

The existing matchStart >= matchEnd guard only caught degenerate zero-width
spans (e.g. "I" in "Ⅳ"). A partial match like "V" against "Ⅳ" produces a
valid non-zero span [0,1) but would replace the entire source character even
though "V" doesn't exist standalone in the file.

Fix: after mapping indices back to the original, verify that
normalizeForFuzzyMatch(original[matchStart:matchEnd]) === workingSearch.
If not, the match straddled an NFKC expansion boundary → return NOT_FOUND.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(editFile): return structured failed result on edit errors

Replace plain string returns with `{ result: "failed", message }` objects
for all failure paths in editFileTool (file not found, text not found,
ambiguous match, and exceptions), matching writeFileTool's pattern so
the LLM and result formatters can reliably detect failures via the
`result` field. No-op case returns `result: "accepted"` since the edit
technically succeeded.

Also fix a stale tool name reference in builtinTools prompt instructions
(writeToFile → writeFile).

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

---------

Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-03-17 18:51:39 +09:00
Logan Yang
a0ba6eb0a9
feat: add obsidianBases CLI tool (read-only) (#2265)
* feat: add obsidianBases CLI tool (read-only)

Add obsidianBases — a read-only category-based CLI tool for querying
Obsidian Base (database) files. Supports three commands: bases (list all
Base files), base:views (list views in a Base file), and base:query
(query data from a Base view).

Follows the same pattern as existing v1 CLI tools (obsidianProperties,
obsidianTasks, obsidianLinks, obsidianTemplates).

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix: clarify file/path field descriptions in obsidianBases schema

Change "Required" to "Used" in file description and add "Alternative to
file=" in path description to accurately reflect that either file OR path
satisfies the requirement, not both.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
2026-03-05 18:44:43 -08:00
Logan Yang
d849ade60a
Add Obsidian CLI daily/random read tools and reasoning summaries (#2181)
* Add Obsidian CLI daily/random read tools with fallback + reasoning summaries

* chore: move CLI design doc to designdocs/ and remove old TODO doc

- Move docs/OBSIDIAN_CLI_INTEGRATION_DESIGN.md to designdocs/OBSIDIAN_CLI_INTEGRATION.md
- Remove designdocs/todo/OBSIDIAN_CLI_INTEGRATION.md (replaced by PR's design doc)

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix: gate CLI tools behind Platform.isDesktopApp so they are invisible on mobile

- Move CLI tool registration from static BUILTIN_TOOLS array to registerCliTools()
- Only call registerCliTools() when Platform.isDesktopApp is true
- On mobile: tools are not registered, not shown in settings/UI/reasoning
- Update design doc with platform policy and CLI approach rationale

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* docs: update CLI design doc with finalized category-based tool roadmap

- Replace generic v0/v1/v2 tiers with category-based tool grouping
- Define tools: obsidianDailyNote, obsidianProperties, obsidianTasks,
  obsidianFiles, obsidianLinks, obsidianTemplates, obsidianBases,
  obsidianBookmarks, obsidianTags
- Document excluded commands (destructive, plugin/theme, sync, dev tools)
- Add design rationale for category-based approach
- Update rollout plan to match new tool structure

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* docs: remove search commands from v1 roadmap

search and search:context are redundant with Copilot's existing
keyword + semantic search. Update obsidianFiles to only include
read, append, prepend, random:read. Add search to excluded list.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* docs: restrict file writes to daily notes, add write operations policy

- Remove append/prepend from obsidianFiles (now read-only: read, random:read)
- Daily note append/prepend: direct execution, no Composer diff needed
- Property set/remove and task toggle: require light confirmation
- Arbitrary file writes excluded — use existing Composer tool instead
- Add Write Operations Policy section to design doc

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* docs: remove redundant CLI tools from roadmap, add tool disambiguation

Remove `read` from obsidianFiles (redundant with readNote) and drop
obsidianTags category (redundant with getTagList). Add Tool
Disambiguation section documenting overlap analysis and prompt
instruction guidelines for CLI tools.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* docs: defer confirmation-required CLI mutations from v1 to v2

Move property:set, property:remove, and task toggle/status to v2 tier.
v1 now contains only read-only tools + direct-execution daily note
writes. This ensures v1 ships without needing confirmation UX.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* docs: add Appendix A with v1 CLI command reference

Document all 12 v1 CLI commands with parameters, output format, and
real examples. Covers obsidianDailyNote, obsidianProperties,
obsidianTasks, obsidianRandomRead, and obsidianLinks tools. Includes
error response reference.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* feat: implement v1 CLI tools (properties, tasks, links, daily note category)

Add 4 new category-based CLI tools for the Obsidian CLI integration:
- obsidianDailyNote: read, append, prepend, path (replaces v0 obsidianDailyRead)
- obsidianProperties: list vault properties, read per-note properties
- obsidianTasks: list and filter tasks across vault
- obsidianLinks: backlinks, outgoing links, orphans, unresolved links

All tools are desktop-only (gated by Platform.isDesktopApp), invisible on
mobile, and labeled as "Obsidian CLI: ... (Experimental)" in settings.

Includes shared error handling module (cliErrors.ts), reasoning summaries,
tool display names, disambiguation prompt instructions, and 21 new tests.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix: prioritize env CLI binaries and align desktop runtime check

- resolveBinaryCandidates: move env var overrides (OBSIDIAN_CLI_BINARY/
  OBSIDIAN_CLI_PATH) before the default "obsidian" binary so configured
  overrides are tried first, preventing an incompatible PATH binary from
  blocking a valid configured override.
- builtinTools: replace Platform.isDesktopApp with isDesktopRuntime()
  (now exported) so CLI tools are registered on both modern isDesktopApp
  and legacy isDesktop runtimes, matching the check used in the executor.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* refactor: single CLI master toggle, remove v0 overlap, extract buildCliParams

- Group all CLI tools under one "Obsidian CLI (Experimental)" section
  with a single master toggle in settings UI
- Remove v0 obsidianDailyRead registration (superseded by v1 obsidianDailyNote)
- Extract buildCliParams helper to reduce repetitive param building
- Use "cli" category for all CLI tool registrations

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix: align CLI section title with other tool items

Remove horizontal padding from CLI container box so SettingItem
title aligns flush with Vault Search, Web Search, etc. above it.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix: preserve raw stdout for daily:read to avoid stripping Markdown whitespace

Only trim stdout for non-read commands (append, prepend, path) where
whitespace is not semantically meaningful. Read commands return note content
where leading/trailing whitespace may be intentional.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat: add daily create command and obsidianTemplates tool to v1 CLI

- Add 'daily' command to obsidianDailyNote: creates today's daily note
  from configured template if it doesn't exist
- Add obsidianTemplates category tool with 'templates' (list) and
  'template:read' (read content) commands
- Register obsidianTemplates in builtinTools.ts with cli category
- Update AgentReasoningState and toolExecution with new tool/command cases
- Update obsidianDailyNote prompt instructions to mention 'daily' command
- Move obsidianTemplates from v2 to v1 in design doc; add daily command docs
- Add tests for daily command and full obsidianTemplates tool coverage

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix: remove daily command, keep only obsidianTemplates addition

The 'daily' CLI command is a UI action (opens the note in Obsidian) and
returns no content, making it unsuitable as an agent tool. Remove it.

Instead, the agent workflow for template-based daily note creation is:
  obsidianTemplates template:read → daily:read (check existence) →
  daily:prepend (write template content if needed)

Update obsidianDailyNote prompt instructions to describe this pattern.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* docs: update CLI tool prompt instructions for template-based daily note workflow

- obsidianDailyNote: add step-by-step guide for creating daily notes from
  templates (templates list → template:read → daily:prepend); note that
  daily:append/prepend auto-create the note if it doesn't exist
- obsidianTemplates: clarify usage of 'templates' and 'template:read',
  cross-reference the daily note creation workflow

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix: preserve raw stdout for read commands in ObsidianCliDailyTools

Same fix as d2c81b5 for ObsidianCliTools: daily:read and random:read
commands return full markdown note content, so trimming stdout can silently
alter formatting-sensitive notes. Both tools now return raw stdout.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
2026-03-05 17:40:07 -08:00
Logan Yang
2da3fa8574
feat: self-host web search (Firecrawl) + YouTube (Supadata) (#2190)
* feat: add Firecrawl and Supadata self-host support for web search and YouTube

Self-host mode users can now use their own API keys for web search (Firecrawl)
and YouTube transcripts (Supadata) instead of routing through the Brevilabs
backend. Tools gracefully fall back to Brevilabs when no self-host key is set.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* refactor: drop legacy Perplexity wrapper from self-host web search

selfHostWebSearch now returns { content, citations } directly instead of
wrapping results in the OpenAI-chat-completion shaped WebSearchResponse
that Brevilabs inherited from Perplexity. SearchTools unwraps each path
independently.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* refactor: move Miyo Search under self-host conditional and improve description

Miyo Search toggle is now only visible when self-host mode is enabled,
grouped alongside Firecrawl and Supadata settings. Updated description
to be less technical and highlight vault size advantage.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
2026-02-18 23:23:39 -08:00
Logan Yang
b128b25558
Agent UIUX Improvements (#2149)
* Use openrouter openai embedding small as default embedding model

* Increase agent max iterations to 16 and add 5-minute loop timeout

- Raise max tool call iterations limit from 8 to 16
- Add AGENT_LOOP_TIMEOUT_MS constant (5 minutes) to prevent runaway loops
- Update slider max in settings UI to match new limit
- Show appropriate message when loop exits due to timeout vs max iterations

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* Update agent reasoning spinner to sigma shape with smooth animation

- Change from 9-dot diamond to 7-dot sigma (Σ) pattern
- Animation traces sigma shape: top-right → top-left → center → bottom
- Use ease-in-out timing and gradual opacity transitions for smooth motion
- Adjust size to 13.5px for better alignment with text

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* Improve agent reasoning step summaries and fix composer tool UX

- Add meaningful summaries for writeToFile/replaceInFile tools
  (e.g., "Writing to filename" instead of "Calling writeToFile")
- Show "Edit rejected" when user rejects changes in diff view
- Fix "Changes applied successfully" notice showing on reject
- Extract model's intermediate reasoning as finding summaries
- Add TODO doc for composer tool redesign to address 30s feedback gap

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* Add self-host mode eligibility gating and permanent validation

- Increase tool timeout from 60s to 120s
- Show self-host mode section only to Believer/Supporter plan users
- Add permanent validation after 3 consecutive successful checks
- Add useIsSelfHostEligible hook for offline-friendly eligibility check
- Preserve permanent validation status when re-enabling self-host mode

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* Fix self-host validation to require 14-day intervals between count increments

- Only increment validation count when 14+ days have passed since last check
- Document need for structured ComposerTools results in TODO doc
- Add TODO for no-op case handling in AgentReasoningState

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* Fix self-host validation timer and offline re-enable issues

- Don't reset timestamp when < 14 days (preserves interval countdown)
- Allow permanently validated users to see section even if toggle is off
- Supports offline re-enable for users with 3+ successful validations

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* Wire refreshSelfHostModeValidation into plugin startup

Enables the 14-day periodic validation to actually increment the count
toward permanent self-host mode (3 successful checks).

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* Improve self-host mode validation with offline support and documentation

- Add grace period check in validateSelfHostMode for offline re-enable
- Change grace period from 14 to 15 days
- Add comprehensive documentation explaining validation flow
- Fix offline re-enable for users within grace period

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com>
2026-02-04 17:10:28 -08:00
Logan Yang
54e341ca88
Update ollama (#2147)
* Update ollama chat model to fix thinking

* fix: consolidate tool call parsing and add actionable error logging

- Remove duplicate tool call parsing in AutonomousAgentChainRunner
  by using shared buildToolCallsFromChunks() function
- Add sanitizeToolArgs() to remove empty objects from tool args
  (fixes Ollama returning timeRange: {} which fails Zod validation)
- Add actionable logging for tool call failures with full args context
- Clean up unused parameters in AutonomousAgentChainRunner
- Simplify ToolManager.callTool to throw instead of swallowing errors

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* fix: add repeatPenalty for Ollama to reduce repetitive outputs

Local models via Ollama are prone to repetitive hallucination loops.
Adding repeatPenalty=1.1 applies a slight penalty to repeated tokens,
which helps reduce this pattern.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* fix: increase Ollama context window to 128k

Default numCtx of 8192 causes prompt truncation with larger contexts.
Setting numCtx=131072 (128k) to support models with large context.
Ollama automatically caps at model's actual maximum if exceeded.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* fix: handle Ollama empty object tool args at schema level

- Make timeRange inner fields (startTime, endTime) optional in schema
- Update validateTimeRange to handle empty or partial objects from LLMs
- Apply validation in all search tools (local, lexical, semantic)
- Remove sanitizeToolArgs function that was too aggressive
- Fixes tool calls that legitimately accept {} as valid input

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com>
2026-02-03 22:18:39 -08:00
Logan Yang
1e3e0786ef
Migrate to native tool call in plus and agent (#2123)
* Implement self-host mode
* Migrate from XML tool calls to native tool calls and reimplement agent mode
* Use ChatOpenRouter for copilot-plus-flash for native tool call sse support
* Fix QA exclusion for search v3
* Update plan and remove debug messages in agent
* Migrate chains off of xml and clean up related logic
* Implement agent reasoning block
* Update css for responsiveness
* Implement agent query pre-expansion and proper reasoning block display for search
* Update agent docs
* Refine agent reason block
* Refine agent reasoning UX
* Fallback to plus non-agent if native tool call is not supported by the model
* Fix time filter query
* Update self-host description
* Skip agent reasoning block and old tool call banners during chat save and load
* Fix projects mode switch to plus and chat auto saves as non-project bug
2026-01-26 18:35:27 -08:00
Logan Yang
5568b70e0f
Merge 3.1.0 preview (#1906)
* Building persistent memory for copilot (#1848)

* Implement chat input v3 (#1794)

* Fix chat crash React 409 (#1849)

* Fix mobile typeahead menu size (#1853)

* Enhance progress bar and bug fix (#1814)

* feat: Add edit context for progress card.
* fix: When adding a model, do not set the key in the single model setting.
* fix: fix the width of the popover on mobile.

* Refactor Brevilabs API integration to use models base URL (#1855)

- Updated constants to switch from BREVILABS_API_BASE_URL to BREVILABS_MODELS_BASE_URL for model-related API calls.
- Adjusted ChatModelManager and EmbeddingManager to utilize the new models base URL for configuration settings.

* feat: Add new chat history popover. (#1850)

* feat: Add new chat history popover.

* feat: Add open source file button to chat history popover

- Add ArrowUpRight button to each chat history item
- Implement openChatSourceFile method in main.ts
- Add onOpenSourceFile callback prop chain through components
- Open chat files in new Obsidian tabs when clicked
- Optimize error handling to prevent duplicate notices

* feat: Implement localSearch CiC prompting flow in CopilotPlusChainRunner (#1856)

* Properly extract response text in UserMemoryManager (#1857)

* feat: Temporarily disable autocomplete features (#1858)

* chore: Update version to 3.1.0-preview-250927 in manifest.json

* Support space in typeahead trigger and improve search (#1859)

* More chat input enhancement (#1864)

* Fix dropdown color
* Fix badge border in light theme
* Increase search result number
* support paste image
* fix folder context

* Enhance ChatPersistenceManager with filename sanitization tests (#1865)

- Added tests to ensure proper sanitization of wiki link brackets and illegal characters in filenames when saving chat messages.
- Updated filename generation logic to handle empty sanitized topics by defaulting to 'Untitled Chat'.
- Refactored imports in ChatPersistenceManager for better organization.

* Update ApplyView accept button styles for improved visibility and interaction (#1866)

- Adjusted the positioning of the action button to be further from the bottom of the viewport for better accessibility.
- Increased the z-index to ensure the button is always on top of other elements.
- Added a shadow effect to enhance the button's visibility against the background.

* Expose add selection to chat context to free users (#1867)

* New chat input improvements (#1868)

* Improve search logic in at mention search
* Subscribe to file changes
* Detect changes for folders and tags
* Make context badge tooltip always show
* Add full note path in preview
* Fix enter being blocked when no search result

* Rebuild "Active Note" and more chat input improvement (#1873)

* Performance improvement and extend "active note" to note typeahead menu (#1875)

* Add better agent prompt logging (#1882)

* Add read tool (#1883)

* Add readNote tool for reading notes in chunks

* Enhance readNote tool to support dynamic note path display and linked note extraction

* Refine readNote tool instructions for improved clarity and efficiency in note content retrieval

* Add support for readNote tool: integrate emoji, format results, and refine instructions

* Add inline citation reminder functionality to user questions

* Add an alert when user hits the maxToken limit (#1884)

* Refactor AutonomousAgentChainRunner (#1887)

* Refactor AutonomousAgentChainRunner to enhance agent workflow, streamline context preparation, and improve response handling

* Enhance type safety in addChatHistoryToMessages by specifying message structure

* Improve max iteration limit message for clarity and formatting

* Refactor tool display name handling for improved clarity and maintainability

* Refactor tool call ID generation and visibility handling for improved clarity and uniqueness

* Fix agent tool call ID (#1890)

* Enhance tool call ID generation and improve readNote handling in prompts

Update readNote description for clarity and improve prompt instructions

* Update instructions for registerFileTreeTool to clarify usage guidelines

* Clarify instructions for readNote tool to improve context inference and handling of partial note titles

* Add token counter (#1889)

* Fix index rebuild on semantic search toggle (#1891)

* Update token counter label (#1892)

* Implement tag search v3 (#1893)

* feat: Enhance TieredLexicalRetriever to support tag-based retrieval and improve search scoring

- Added support for returning all matching tags in TieredLexicalRetriever.
- Introduced new options for tag terms and returnAllTags in the retriever.
- Updated FullTextEngine to prioritize tag matches and improve scoring for documents with tags.
- Enhanced tokenization to handle hierarchical tags and prevent splitting hyphenated tags.
- Improved handling of frontmatter tags in documents.
- Updated search tools to accommodate new tag handling features.
- Added tests to verify the functionality of tag-based retrieval and scoring improvements.

* fix: Improve logging for query expansion in SearchCore

* feat: Add explanation for non-tag matches in FullTextEngine search results

* feat: Enhance QueryExpander to preserve standalone terms in tag handling and improve term validation

* feat: Enhance QueryExpander and TieredLexicalRetriever to improve tag handling and standalone term extraction

* Update version to 3.1.0-preview-251006 in manifest.json

* Normalize tag queries for case-insensitive matching and improve search functionality (#1894)

* Implement merge retriever (#1896)

* Fix note read (#1897)

* Enhance note resolution logic and add tests for wiki-linked notes and basename matching

* Implement note resolution outcome types and enhance readNoteTool tests for ambiguous matches

* Add deriveReadNoteDisplayName function and enhance readNoteTool tests for edge cases

* Fix note tool UI freeze (#1898)

* Update how tags work in context (#1895)

* Enhance file creation instructions in modelAdapter and update tool usage guidelines in builtinTools (#1901)

- Added instructions for confirming folder existence before creating new files in modelAdapter.
- Updated custom prompt instructions in builtinTools to clarify the use of getFileTree for folder lookups when creating new notes.

* Do not add url context for youtube url (#1899)

* Update YouTube Script command and modal title to indicate Plus feature (#1903)

* Enhance ChatPersistenceManager to handle file save conflicts (#1904)

* Enhance ChatPersistenceManager to handle file save conflicts and improve epoch handling

* Fix type checking for existing files in ChatPersistenceManager to prevent errors

* Fix verify add (#1905)

- Rename "Verify" button to "Test" in Add Model dialog
- Make verification not required for adding model in Set Keys
- Upgrade chatAnthropic client to fix the Top P -1 error for Claude Opus models

* Enhance XML parsing to handle tool calls missing closing tags

---------

Co-authored-by: Wenzheng Jiang <jwzh.hi@gmail.com>
Co-authored-by: Zero Liu <zero@lumos.com>
Co-authored-by: Emt-lin <41323133+Emt-lin@users.noreply.github.com>
2025-10-10 21:38:50 -07:00
Logan Yang
9327c7a916
Fix tool calls UI freeze (#1846)
* Fix tool call UI freeze
* Have no sources section rendered when there's none
2025-09-24 00:56:21 -07:00
Logan Yang
af5cc5ed19
feat: add search explanation table in log (#1805)
- Add search explanation table in log
- Clean up log for log file
- Implement open and clear log file commands
- Exclude log file from search (both lexical and semantic)
2025-09-11 01:05:34 -07:00
Logan Yang
a0d5d0b8ea
Go back to orama for semantic search (#1737)
* refactor: transition to semantic search with VectorStoreManager

- Updated the search architecture to utilize VectorStoreManager for semantic indexing and retrieval, replacing the legacy MemoryIndexManager.
- Removed deprecated Orama components and streamlined the search process for improved performance and clarity.
- Enhanced settings management by removing legacy search options and clarifying semantic search configurations.
- Refactored various components to support the new semantic search system, ensuring consistent behavior and improved user experience.
- Updated documentation to reflect changes in search functionality and settings management.

* feat: add optional parameters for search configuration in ChainManager and VaultQAChainRunner

- Introduced new optional parameters: timeRange, textWeight, returnAll, and useRerankerThreshold to enhance search configuration flexibility.
- Updated findRelevantNotes to correctly compute average embeddings by dividing the sum by the number of embeddings, ensuring accurate average calculations.
- Enhanced SearchTools to include timeRange and textWeight in search tool configurations, improving search customization options.

* feat: add textWeight and additional parameters to search configuration

- Introduced textWeight, timeRange, returnAll, and useRerankerThreshold as optional parameters in the CopilotPlugin to enhance search configuration flexibility.
- Updated the search logic to accommodate these new parameters, improving customization options for users.

* refactor: remove deprecated indexing components and streamline search architecture

- Deleted the IndexingNotificationManager, IndexingPipeline, IndexingProgressTracker, and IndexPersistenceManager classes to simplify the codebase and remove unused functionality.
- Updated README.md to reflect the removal of semantic search features and clarify the current search architecture.
- Enhanced documentation to provide clear guidance on the new chunk-based lexical search system, emphasizing its performance and memory efficiency.
- Removed associated tests to maintain code clarity and focus on active components.

* feat: introduce LLM timeout configuration and enhance query handling

- Added LLM_TIMEOUT_MS constant for a standardized timeout of 10 seconds for LLM operations.
- Updated HybridRetriever to utilize withTimeout for query rewriting, ensuring operations respect the new timeout.
- Adjusted QueryExpander and SearchCore to use LLM_TIMEOUT_MS for consistent timeout handling across components.
- Enhanced localSearchTool to delegate between lexical and semantic search based on settings, improving search flexibility.

* feat: enhance localSearch handling and tool confirmation messages

- Added special handling in getToolDisplayName for localSearch to display the search type based on settings.
- Updated getToolConfirmtionMessage to include salient terms for lexical search when applicable, improving user feedback during tool calls.
- Integrated settings retrieval to conditionally display relevant information based on user preferences.

* feat: add number of partitions setting to QASettings for improved indexing control

- Introduced a new setting for "Number of Partitions" in QASettings, allowing users to configure the number of partitions for the Copilot index.
- Updated the UI to provide a description and options for selecting the number of partitions, enhancing user experience and flexibility in managing large vaults.
- Removed the previous conditional rendering of the partitions setting based on semantic search, streamlining the settings interface.

* fix: update default requests per minute setting in QASettings

- Changed the default value for "Requests per Minute" from 90 to 30 to better align with user needs and prevent rate limiting issues.
- Adjusted the maximum value for the setting from 300 to 60, ensuring users stay within optimal limits for embedding requests.
- Updated the value assignment to ensure it does not exceed the new maximum, enhancing the robustness of the settings configuration.
2025-08-22 18:17:53 -07:00
Logan Yang
7bc84923fa
Improve Search v3 (#1721)
* Implement graph boost and remove graph expander

- Removed the GraphExpander class and its associated tests, streamlining the search process.
- Eliminated the graphHops setting from CopilotSettings and related sanitization logic.
- Updated SearchCore and TieredLexicalRetriever to utilize direct candidate limiting without graph expansion.
- Introduced GraphBoostCalculator for link-based reranking, enhancing search result relevance based on candidate connections.
- Updated documentation to reflect changes in search architecture and removed references to graph expansion.

* Refactor search scoring and implement folder boosting

- Updated the search scoring mechanism to remove the grep prior, simplifying the ranking process.
- Introduced the FolderBoostCalculator to apply logarithmic boosts for documents in folders with multiple matches, enhancing result relevance.
- Updated SearchCore to integrate folder boosting after the weighted RRF fusion.
- Refactored FullTextEngine to remove the folder boosting logic, centralizing it in the new calculator.
- Added comprehensive tests for the FolderBoostCalculator to ensure correct boost application and behavior.
- Revised documentation to reflect changes in the search architecture and boosting strategies.

* Enhance search functionality with scoring normalization and explanations

- Introduced ScoreNormalizer to apply z-score and tanh normalization, preventing auto-1.0 scores and improving score distribution.
- Updated FullTextEngine to include lexical match explanations in search results, providing insights into scoring factors.
- Enhanced SearchCore to pass the same candidate set to both full-text and semantic searches, ensuring consistency in results.
- Implemented detailed logging for candidate filtering and search processes, improving traceability and debugging.
- Added comprehensive tests for ScoreNormalizer and updated existing tests to validate new scoring behaviors.

* Add semantic weight slider

- Added `semanticSearchWeight` to `DEFAULT_SETTINGS` for controlling the balance between semantic and lexical search.
- Updated `SettingItem` and `SettingSlider` components to support a suffix for better user experience in displaying semantic weight.
- Introduced a new slider in the QASettings UI for adjusting semantic search weight, allowing users to set preferences between 0% and 100%.
- Implemented tests for the new semantic weight functionality in `SearchCore`, ensuring correct application of weights during search operations.

* Enhance memory management and search functionality

- Added `lexicalSearchRamLimit` to `DEFAULT_SETTINGS` for controlling RAM usage in lexical search, with a default of 100 MB and a range of 20-1000 MB.
- Updated `MemoryManager` to utilize the new RAM limit setting, ensuring proper memory allocation and management during search operations.
- Refactored `GrepScanner` to simplify batch size handling and yield intervals, improving performance.
- Introduced unit tests for `MemoryManager` to validate RAM limit functionality and memory tracking behaviors.
- Removed the deprecated `platformUtils` module, streamlining the codebase.

* Enhance sources modal with source explanations

- Updated source structures across various components to include an optional `explanation` field, providing additional context for search results.
- Modified `SourcesModal` to display explanations in a collapsible format, improving user experience and clarity.
- Adjusted `SearchCore`, `TieredLexicalRetriever`, and related classes to preserve and pass explanation data through the search pipeline.
- Refactored relevant utility functions to accommodate the new explanation field, ensuring consistency in source handling.
- Enhanced logging and documentation to reflect changes in search result structures and explanation handling.

* Enhance weighted RRF function to merge explanations

- Updated the `weightedRRF` function to merge explanations from both lexical and semantic search results, improving the clarity and depth of search result context.
- Implemented logic to combine lexical matches and semantic scores, ensuring comprehensive explanation handling for each item.
- Adjusted the explanation merging process to maintain existing scores while integrating new data, enhancing the overall search experience.

* Update QASettings component to clarify description for Max Sources setting

- Changed the description for the Max Sources slider to specify that Copilot now retrieves relevant notes instead of blocks, and updated the default value for N from 3 to 15, enhancing user understanding of the setting's functionality.

* Refactor search architecture to enable parallel execution of lexical and semantic searches

- Updated the search pipeline to run full-text and semantic searches concurrently, improving performance and reducing latency.
- Introduced new methods for executing lexical and semantic searches separately, enhancing code organization and clarity.
- Adjusted documentation to reflect changes in search execution and added details on the parallel search process.
- Increased LLM generation timeout and refined candidate handling for improved search accuracy.

* Increase default tool timeout to 60 seconds and update search result formatting to include full content for LLM context.

* Enhance graph boost functionality and improve search performance

- Updated SourcesModal to include detailed explanations for graph connections, enhancing user understanding of search results.
- Refactored SearchCore to apply graph boosts more effectively, including logging improvements for better traceability.
- Modified GraphBoostCalculator to support new connection types and weights, allowing for more nuanced scoring based on backlinks, co-citations, and shared tags.
- Adjusted FolderBoostCalculator to reduce the maximum boost factor, ensuring more balanced scoring.
- Enhanced FullTextEngine to defer index creation for improved UI responsiveness and added memory management features.
- Updated tests for GraphBoostCalculator to validate new functionality and ensure accurate scoring behavior.

* Improve search signals

- Updated QueryExpander to include original user query and expanded variants in the response structure, improving clarity and usability.
- Refactored SearchCore to log search details with reduced verbosity, focusing on significant query expansion results and candidate counts.
- Improved FullTextEngine to ensure scoring is based solely on the original query and salient terms, while expanded queries are used only for recall.
- Enhanced logging throughout the search process for better traceability and debugging, including detailed results summaries and performance metrics.

* Fix tests

* Update field weights in FullTextEngine for improved scoring consistency

- Adjusted weights for metadata fields (path, headings, tags, props, links) from 2.5 and 2 to 1.5, ensuring a more balanced scoring system.
- Updated corresponding tests to reflect the new weight values, maintaining alignment between implementation and test cases.

* Refactor modelAdapter to improve query handling and guidelines

- Moved the import statement for BaseChatModel to the correct position for better organization.
- Added new guidelines for query handling, emphasizing the use of personal knowledge or notes before web searches, and clarifying the use of tool names in responses.

* Update README.md to reflect changes in search scoring and normalization

- Adjusted field weights for Full-Text and Graph Boosts to improve scoring consistency and balance.
- Changed normalization method from Z-score to Min-max, enhancing score range management.
- Updated documentation to clarify the new scoring parameters and their implications for search results.

* Refactor localSearch result processing for improved consistency and clarity

- Introduced a new utility module for handling localSearch results, including formatting and source extraction.
- Updated AutonomousAgentChainRunner and CopilotPlusChainRunner to utilize the new processing methods, ensuring consistent handling of localSearch outputs.
- Enhanced error handling and logging for localSearch results, improving traceability and user feedback.
- Removed redundant code related to localSearch result processing, streamlining the execution flow.

* Enhance error handling in IndexingPipeline for embedding failures

- Added detailed logging for token counts when embedding errors occur, aiding in debugging and user guidance.
- Implemented a try-catch block around the embedding process to capture and log specific error messages related to token limits.
- Introduced ChatModelManager to analyze token counts for each chunk, providing insights into potential batch size adjustments.

* Reduce maxCandidates in GraphBoostCalculator from 50 to 3 for improved search performance and relevance.

* Enhance GraphBoostCalculator with semantic similarity threshold and max candidates adjustments

- Increased maxCandidates from 3 to 10 to allow for more comprehensive result analysis.
- Introduced semanticSimilarityThreshold to boost results based on a minimum similarity score of 0.75, improving relevance in search results.
- Updated filtering logic to respect both the semantic threshold and max candidates limit, ensuring only the most relevant results are boosted.

* Fix tests, update readme

- Added a Jest mock for ChatModelManager to simulate token counting without requiring the actual SDK, streamlining test execution and improving isolation of unit tests.

* Fix ToolResultFormatter and add tests

- Introduced comprehensive tests for the ToolResultFormatter class, covering various scenarios for both local and web search formats.
- Validated handling of XML-wrapped search results, including cases with multiple documents, empty results, and malformed XML.
- Ensured fallback to JSON parsing for non-XML results and tested for proper formatting of output messages.
- Enhanced test coverage to improve reliability and maintainability of the formatting logic.

* Enhance FolderBoostCalculator with relevance ratio and improved scoring logic

- Added totalDocsInFolder and relevanceRatio to the FolderBoostResult interface to provide better insights into folder statistics.
- Updated the boost calculation logic to apply boosts based on a minimum relevance ratio, ensuring only folders with a significant portion of relevant documents receive boosts.
- Revised README.md to reflect changes in folder boost calculations, including new requirements for minimum relevant documents and relevance ratio thresholds.
- Enhanced unit tests for FolderBoostCalculator to cover new scenarios and ensure correct behavior under various conditions.

* Fix test warnings

- Added a check to ensure the getConfig method exists before calling it, enhancing compatibility with test environments.
- Updated error logging to only occur in non-test environments, reducing unnecessary console output during testing.
2025-08-15 21:24:42 -07:00
Logan Yang
8f8f4f7454
Adapt gpt5 (#1713)
* Use responses api for GPT-5 models

- Updated configuration for GPT-5 models to utilize the Responses API for verbosity settings, ensuring proper handling of verbosity as a nested parameter.
- Added logging to indicate when the Responses API is enabled for GPT-5 models during model instance creation.
- Refactored model instance creation logic to automatically set the useResponsesApi flag for GPT-5 models, improving clarity and functionality in model configuration.

* Add GPT-5 specific enhancements to model adapter

- Introduced a method to check if the model is part of the GPT-5 family, enhancing model-specific behavior.
- Added GPT-5 specific instructions for tool usage, improving clarity on tool call requirements.
- Implemented a response sanitization method for GPT-5 to handle multiple iterations, ensuring only the most relevant response is returned.
- Refactored user message enhancement logic to streamline tool reminder messages based on the presence of required tools.

* Enhance tool execution responses with structured JSON format

- Updated the `executeSequentialToolCall` function to return an empty JSON object instead of a plain string when tools return null/undefined results, improving compatibility.
- Refactored the `writeToFileTool` and `replaceInFileTool` to return structured JSON responses, ensuring consistent parsing and better handling of results.
- Modified the `webSearchTool` to return a structured JSON array of results, aligning with the new response format for improved consistency across tools.
- Enhanced the `ToolResultFormatter` to handle the new JSON response formats, ensuring user-friendly display of tool results in the UI.
2025-08-11 22:21:55 -07:00
Logan Yang
df3efaecc0
Implement vault search v3 (#1703)
* Add LexicalEngine and related interfaces for enhanced search functionality

- Implement LexicalEngine class utilizing FlexSearch for efficient document indexing and searching.
- Create Hit, SearchResult, SearchOptions, and RetrieverEngine interfaces to standardize search operations.
- Update package.json and package-lock.json to include new dependencies: flexsearch and p-queue.

* Add QueryExpander class and tests for enhanced search query expansion

* Add README for Tiered Note-Level Lexical Retrieval with multilingual support and enhanced search pipeline

* Implement v3 tiered search with GrepScanner, FullTextEngine, and GraphExpander

- Add GrepScanner for fast substring search (L0)
- Implement FullTextEngine with ephemeral FlexSearch index (L1)
- Add GraphExpander for link-based candidate expansion
- Create MemoryManager with platform-aware limits
- Implement weighted RRF fusion for result combination
- Add SemanticReranker placeholder for future integration
- Include comprehensive tests for core components
- Simplify code based on review: use TextEncoder, extract methods, streamline RRF
- Add clear logging for debugging search pipeline

The architecture follows a tiered approach:
1. Grep scan for initial candidates
2. Graph expansion to increase recall
3. Full-text search on expanded set
4. Optional semantic reranking
5. RRF fusion to combine signals

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* Enhance tiered retrieval recall with both rewritten queries and the expanded salient terms

- Added detailed example of end-to-end query processing in README.md
- Updated TieredRetriever to log salient terms during query expansion
- Modified FullTextEngine to index link basenames for improved searchability
- Adjusted NoteDoc interface to clarify link handling and indexing

* Refactor QueryExpander configuration and caching logic for improved clarity and performance; enhance GraphExpander documentation and testing; remove unused fields from NoteDoc interface.

* Refactor search retrieval system to wire in TieredLexicalRetriever

- Replaced HybridRetriever with TieredLexicalRetriever in ChainManager, VaultQAChainRunner, and main.ts for improved multi-stage retrieval.
- Updated README.md to reflect new integration tasks and performance benchmarks.
- Introduced TieredLexicalRetriever class to handle on-demand indexing and retrieval.
- Enhanced GrepScanner to support inclusion/exclusion patterns for file indexing.
- Modified TieredRetriever to combine expanded salient terms and improved logging for final results.
- Removed legacy index management in favor of ephemeral indexing with TieredLexicalRetriever.
- Updated interfaces and utility functions to support new retrieval logic.

* feat: Implement first working TieredLexicalRetriever and refactor search scoring

- Added comprehensive tests for TieredLexicalRetriever, covering folder boosting and result combination.
- Refactored TieredLexicalRetriever to utilize SearchCore instead of TieredRetriever.
- Enhanced FullTextEngine with improved scoring mechanisms, including field weighting and multi-field match bonuses.
- Introduced FuzzyMatcher utility for fuzzy matching capabilities, including Levenshtein distance and variant generation.
- Updated GrepScanner to prioritize path matching for faster search results.
- Implemented normalized scoring in RRF for better ranking consistency.

* feat: Update vault search result display to show snippet of content instead of full text

* feat: Enhance FullTextEngine to index frontmatter property values and improve search scoring

* feat: Improve scoring and logging

* feat: Refactor TieredLexicalRetriever to support time-based queries and improve document retrieval logic

* Remove TODO.md from tracking and add to .gitignore

- TODO.md is now a local-only development session tracker
- Prevents accidental commits of work-in-progress task lists
- Each developer can maintain their own TODO.md without conflicts

* feat: Update dependencies and enhance search functionality

- Upgraded axios to version 1.11.0 and electron to version 27.3.11 for improved performance and security.
- Refactored QueryExpander to limit queries to the original for strict fallback tests.
- Enhanced SearchCore to rank grep hits by evidence quality before fusion, improving retrieval accuracy.
- Implemented a new method in SearchCore to rank grep hits based on evidence strength.
- Updated TieredLexicalRetriever tests to ensure proper integration with mocked SearchCore.
- Improved FuzzyMatcher to include plural/singular normalization for better fuzzy matching.

* feat: Add tool call marker encoding/decoding

- Introduced new utility functions for encoding and decoding tool call markers to ensure safe embedding in HTML comments.
- Updated `updateChatMemory` to handle encoded tool call markers, preserving their integrity during memory storage.
- Enhanced logging to decode tool marker results for better readability while maintaining encoded formats for storage.
- Added comprehensive tests for tool call marker functionality to ensure correct encoding and decoding behavior.
- Refactored related components to integrate the new encoding/decoding logic seamlessly.

* feat: Enhance FullTextEngine search to support low-weight terms and improve scoring

- Updated FullTextEngine to accept low-weight terms in the search method, allowing for better handling of salient terms.
- Implemented downweighting for boolean and numeric tokens in the properties field to reduce noise in search results.
- Added a new test case to validate the downweighting behavior for boolean and numeric queries in FullTextEngine.
- Improved logging for full-text search results to provide clearer insights into the search process.

* feat: Update GraphExpander to enhance search recall with adaptive hop logic

- Implemented guardrails in GraphExpander to adjust hop depth based on the number of grep hits: allows +1 hop for small sets (<5) and limits to 1 hop for large sets (≥50).
- Updated README.md to reflect new guardrail logic and scoring normalization in search results.
- Enhanced test cases to validate the new behavior of skipping co-citations for large result sets and allowing additional hops for smaller sets.

* feat: Filter out background tools during streaming to enhance user experience

- Added logic to determine and filter out background tools, preventing their names from appearing in the tool call display during streaming.
- Implemented a mechanism to include partial tool names only if they meet a specified length threshold, improving clarity in tool call presentations.

* feat: Enhance search tools to support time-based queries and display modified time

- Updated localSearchTool to ensure a healthy cap on max source chunks for time-based queries, improving recall.
- Modified ToolResultFormatter to display actual modified time for time-filtered results, enhancing clarity in search results.
- Adjusted output formatting to differentiate between recency and relevance scores based on query type.

* feat: Introduce semantic search capabilities with Memory Index support

- Added `enableSemanticSearchV3` setting to control the new semantic search feature.
- Implemented `MemoryIndexManager` for managing in-memory vector indexing with JSONL persistence.
- Enhanced `SearchCore` to utilize semantic retrieval based on the new memory index.
- Introduced command to build the semantic memory index, improving search accuracy and retrieval efficiency.
- Updated relevant components to integrate semantic search functionality seamlessly.

* feat: Add unit tests for MemoryIndexManager to validate functionality

- Introduced comprehensive tests for the MemoryIndexManager, covering scenarios such as loading from a file, building a vector store, and indexing vault contents.
- Implemented a mock embeddings API to facilitate testing without external dependencies.
- Added a utility function to reset the MemoryIndexManager state between tests, ensuring isolation and reliability of test outcomes.

* feat: Enhance MemoryIndexManager and related components for improved semantic indexing

- Introduced incremental indexing capabilities in MemoryIndexManager to update the JSONL index with new or modified files, enhancing efficiency.
- Updated commands to utilize the new incremental indexing method, providing users with real-time updates to the semantic memory index.
- Refactored existing indexing logic to support partitioned writes, improving performance and manageability of large datasets.
- Enhanced user notifications during indexing processes to provide better feedback on progress and status.
- Added a setting to enable semantic search, allowing users to blend semantic similarity into search results seamlessly.

* feat: Refine scoring display and enhance search result handling

- Updated SourcesModal to display relevance scores with four decimal places for consistency with SearchCore logs.
- Enhanced TieredLexicalRetriever to include a new `rerank_score` field for better score management and consistency across search results.
- Modified the combineResults method to ensure that title matches retain their original score while incorporating a fused score as `rerank_score`.
- Adjusted formatting in SearchTools to ensure both `score` and `rerank_score` reflect the same final score when present.
- Updated ToolResultFormatter to display scores with four decimal places, improving clarity in search result presentations.

* refactor: Simplify relevant notes retrieval by removing VectorStoreManager dependency

- Removed the use of VectorStoreManager in the relevant notes fetching logic, streamlining the process.
- Integrated MemoryIndexManager for improved handling of in-memory indexing and note retrieval.
- Enhanced error handling to ensure relevant notes are only fetched when the embedding index is available.
- Updated related functions to utilize the new memory index approach, improving performance and reliability.

* refactor: Remove VectorStoreManager dependency and streamline indexing logic

- Eliminated the VectorStoreManager from various components, transitioning to MemoryIndexManager for indexing and retrieval.
- Updated project and chain managers to remove unnecessary dependencies, enhancing code clarity and maintainability.
- Improved error handling and indexing conditions, particularly for mobile users, ensuring a more robust initialization process.
- Refactored settings components to utilize the new memory indexing approach, simplifying the user experience and reducing legacy code.

* chore: Mark legacy components as deprecated in preparation for v3 transition

- Annotated various files including DebugSearchModal, OramaSearchModal, chunkedStorage, dbOperations, hybridRetriever, and vectorStoreManager as deprecated, indicating they are obsolete in v3.
- Updated README.md to reflect the current implementation status and migration notes, emphasizing the removal of Orama-based modules and the transition to MemoryIndexManager for indexing and retrieval.

* feat: Implement file tracking and reindexing for modified files

- Introduced a new FileTrackingState interface to manage the last active file and its modification time.
- Enhanced the CopilotPlugin to opportunistically reindex the previous active file if it was modified while active, contingent on semantic search settings.
- Updated MemoryIndexManager to support reindexing of single modified files, improving efficiency in handling changes.
- Added unit tests for reindexSingleFileIfModified to ensure correct functionality and performance.

* feat: Add graph hops setting for enhanced search result expansion

- Introduced a new `graphHops` setting in `CopilotSettings` to control the number of hops for graph expansion during search, with a default value of 1 and a range of 1-3.
- Updated the `sanitizeSettings` function to validate the `graphHops` value.
- Enhanced the `SearchCore` and `TieredLexicalRetriever` classes to utilize the `graphHops` setting for improved search result relevance.
- Updated documentation in `README.md` to reflect the new feature and its security optimizations.

* refactor: Improve error handling and indexing logic in MemoryIndexManager and related components

- Replaced console error logging with structured logging using logError and logWarn for better error tracking.
- Enhanced the refresh and reindexing functions to ensure proper user notifications and error handling.
- Updated the logic for managing indexed files, including handling exclusions and ensuring accurate reporting of indexed and unindexed files.
- Implemented rate limiting in the MemoryIndexManager to optimize embedding requests and prevent overloading the service.
- Refactored chunk processing to improve efficiency and clarity in the indexing workflow.

* chore: Update README.md to reflect final session completion and key fixes

- Expanded the final session summary with a date and detailed list of completed features and fixes, including UI enhancements and improved logging practices.
- Clarified the status of deferred features and provided migration notes for better user guidance.
- Ensured documentation aligns with the latest implementation changes and optimizations.

* chore: Update memory limits in README.md and MemoryManager.ts for improved performance

- Adjusted memory limits for mobile and desktop platforms in both README.md and MemoryManager.ts to reflect increased capacity (20MB mobile, 100MB desktop).
- Ensured documentation aligns with the latest implementation changes for better clarity on resource management.

* feat: Integrate HyDE document generation into SearchCore for enhanced semantic search

- Implemented a new method to generate hypothetical documents (HyDE) to improve semantic search capabilities.
- Added timeout handling for HyDE generation to ensure graceful error management.
- Updated SearchCore to utilize HyDE documents in search queries, enhancing the relevance of results when semantic search is enabled.
- Introduced unit tests to validate the integration and functionality of HyDE generation within the search process.

* refactor: Enhance MemoryIndexManager with public methods for better indexing management

- Introduced public methods in MemoryIndexManager to streamline access to indexed file paths, check if a file is indexed, retrieve embeddings, and clear the index.
- Updated related components to utilize these new methods, improving code clarity and reducing direct access to internal properties.
- Enhanced error handling and user notifications during memory index operations.

* feat: Implement indexing notification and progress management

- Introduced the IndexingNotificationManager to handle UI notifications during indexing operations, allowing users to pause or stop the process.
- Added the IndexingProgressTracker to track progress across multiple files, enhancing user feedback during indexing.
- Developed the IndexingPipeline to manage the chunking and processing of files into embeddings, improving the overall indexing workflow.
- Created the IndexPersistenceManager for managing the persistence of indexed data, ensuring efficient storage and retrieval of index records.
- Refactored MemoryIndexManager to utilize the new components, streamlining the indexing process and improving code organization.

---------

Co-authored-by: Claude <noreply@anthropic.com>
2025-08-11 16:58:04 -07:00
Logan Yang
bc2d7f660a
Implement autonomous agent (#1689)
* Implement autonomous agent mode and new message architecture

- Implement autonomous agent mode with sequential thinking capabilities
- Migrate from sharedState to new clean message management architecture
- Add ChatManager, MessageRepository, and ContextManager for better separation of concerns
- Implement project-based chat isolation with separate message repositories per project
- Add ChatPersistenceManager for saving/loading chat history
- Refactor chain runner architecture with specialized runners (Autonomous, Project, VaultQA)
- Add XML tool call handling for better compatibility across LLM providers
- Introduce vault and web search toggles in settings
- Enhance model adapters with explicit tool usage instructions
- Add comprehensive test coverage for new architecture components
- Update UI components to use new ChatUIState instead of SharedState

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* Enhance context processing and documentation

- Added detailed XML structure for context notes, including metadata (creation and modification times) for notes and selected text.
- Introduced new tests for message lifecycle and XML tag formatting to ensure proper context handling.
- Created TODO.md to track technical debt and future improvements related to context processing and file handling.
- Updated CLAUDE.md to reference the new TODO.md for technical debt awareness.

This commit improves the clarity and functionality of context processing in messages, ensuring rich context is maintained throughout the message lifecycle.

* Fix composer instruction in new message implementation

* Add writeToFile tool to agent (#1632)

* Add writeToFile tool call to agent

* Update src/LLMProviders/chainRunner/AutonomousAgentChainRunner.ts

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>

* Update src/tools/ComposerTools.ts

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>

* Remove unuseful comment

---------

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>

* Fix tests

* Enhance context processing with new XML tags for notes and selected text (#1633)

* Enhance context processing with new XML tags for notes and selected text

- Introduced new constants for XML tags: SELECTED_TEXT_TAG, VARIABLE_TAG, VARIABLE_NOTE_TAG, EMBEDDED_PDF_TAG, VAULT_NOTE_TAG, and RETRIEVED_DOCUMENT_TAG.
- Updated context processing to format embedded PDFs and notes with XML structure.
- Modified prompt processing to include XML tags for selected text and variables, improving clarity and structure in generated outputs.
- Enhanced tests to validate the new XML formatting in processed prompts.

* Implement XML escaping utility functions and integrate into context processing

- Added `escapeXml` and `escapeXmlAttribute` functions to handle XML special character escaping, enhancing security against XML injection.
- Updated context processing to utilize these functions for escaping note titles, paths, and content, ensuring proper XML formatting.
- Enhanced tests to validate XML escaping functionality across various scenarios, including selected text and variable names.
- Introduced new test files for XML utility functions to ensure comprehensive coverage and reliability.

* Refactor XML utility functions and update imports

- Moved `escapeXml` and `escapeXmlAttribute` functions from `utils/xmlUtils` to `LLMProviders/chainRunner/utils/xmlParsing`, enhancing modularity.
- Updated all relevant imports across the codebase to reflect the new location of XML utility functions.
- Removed obsolete `xmlUtils` file and its associated tests, consolidating XML handling in a single module for better maintainability.

* Add message creation callback in ChatManager for immediate UI updates (#1634)

- Introduced a new method `setOnMessageCreatedCallback` in ChatManager to allow setting a callback that triggers when a message is created.
- Updated ChatUIState to utilize this callback for notifying listeners, ensuring the UI updates immediately upon message creation.
- This enhancement improves the responsiveness of the chat interface by synchronizing message creation events with UI state updates.

* Enhance TimeTools tests for invalid expressions

- Added setup to mock console.warn in tests for invalid time expressions.
- Verified that the appropriate warning message is logged when parsing fails.
- Improved test coverage for handling various invalid time inputs.

* Refactor local search handling and restore sources display

- Unified tool handling in CopilotPlusChainRunner to fix websearch results being ignored when localSearch has results
- All tool outputs now go through the same prepareEnhancedUserMessage method
- Preserved QA format and instruction when only localSearch is used
- Added proper validation for localSearch results (non-empty documents array)
- Maintained time expression support for temporal queries
- Fixed source tracking and display in ChatUIState
- Enhanced error handling for JSON parsing of search results

* Enhance AutonomousAgentChainRunner to track tool calls and results (#1639)

- Introduced a new property to store LLM-formatted messages for memory management.
- Reset LLM messages at the start of each run to ensure fresh context.
- Updated response handling to include LLM-formatted outputs, enhancing memory context for future iterations.
- Modified the base class to accept an optional LLM-formatted output parameter for improved context saving.
- Enhanced the writeToFile tool's response message for clarity on user actions.

* Quick Command (cmd+k) (#1640)

* Quick Command (cmd+k)

* Update custom command modal style

* Improve prompt

* Use submenu for commands

* Fix cursor comment

* Align selected_text variable name

* Fix embedded image wikilinks (#1641)

- Updated the `extractEmbeddedImages` method to accept an optional `sourcePath` parameter for resolving wikilinks.
- Implemented logic to determine the source path from context notes or fallback to the active file.
- Enhanced logging for unresolved images to improve debugging and user feedback.
- Ensured that embedded images are processed correctly based on the new source path handling.

* Fix salient term language issue

* Dedupe source notes (#1642)

* Fix salient term language issue

* Refactor source handling to include path in addition to title and score

- Updated source structures across multiple classes to include a `path` property alongside `title` and `score`.
- Modified methods in `AutonomousAgentChainRunner`, `BaseChainRunner`, and `CopilotPlusChainRunner` to accommodate the new source format.
- Enhanced the `deduplicateSources` function to use `path` as the unique key, falling back to `title` if necessary.
- Adjusted the `SourcesModal` to display paths correctly and ensure links open using the appropriate source path.
- Updated type definitions in `message.ts` to reflect the new source structure.

* Update path handling in source mapping for AutonomousAgentChainRunner

- Modified the source mapping logic to ensure the `path` property defaults to an empty string if not provided, enhancing robustness in source data handling.
- This change improves the consistency of source objects by ensuring that all properties are defined, which aids in downstream processing.

* Bump manifest version to v3

* Fix image (#1643)

* Fix salient term language issue

* Bump manifest version to v3

* Fix image passing

- Updated Chat, ChatManager, MessageRepository, and ChatUIState to include an optional `content` parameter in message handling.
- Adjusted method signatures and message creation logic to accommodate the new parameter, improving flexibility in message processing.

* Fix regenerate (#1644)

* Fix image in agent chain (#1646)

* Add YouTube transcription processing to AutonomousAgentChainRunner (#1647)

- Implemented a new method to extract and process YouTube URLs from user messages.
- Fetch transcriptions using the simpleYoutubeTranscriptionTool and handle errors gracefully.
- Updated conversation messages to include fetched transcriptions for improved context in responses.

* Disable quick command when live-mode is not on (#1648)

* Do not call writeToFileTool again for accepted changes as well (#1652)

* Trigger youtube tool only for urls in prompt not context (#1653)

* Stop calling youtube tool in context notes in agent mode

- Added a new instruction for handling YouTube URLs in the DEFAULT_SYSTEM_PROMPT.
- Removed the direct usage of simpleYoutubeTranscriptionTool in the AutonomousAgentChainRunner, as YouTube transcriptions are now automatically processed.
- Updated parameter naming conventions in modelAdapter for clarity and consistency.
- Cleaned up the simpleYoutubeTranscriptionTool definition by removing unnecessary parameters.

* Add agent loop limit message (#1655)

* Add composer toggle and implement auto-preview (#1651)

* Update composer output format to XML and refactor related components

- Changed the output format for composer instructions from JSON to XML in `constants.ts`.
- Updated `CopilotPlusChainRunner` to utilize the new XML format and adjusted streaming logic accordingly.
- Added a toggle for the composer feature in `ChatInput.tsx` and updated UI elements to reflect this change.
- Removed the `ComposerCodeBlock` component as it is no longer needed with the new implementation.
- Cleaned up unused code and comments in `ChatSingleMessage.tsx` related to the previous composer handling.

* Update src/constants.ts

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>

* Update src/constants.ts

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>

* Remove redundant tests

* Update doc

* Refactor composer handling and implement ActionBlockStreamer

- Replaced `ComposerBlockStreamer` with `ActionBlockStreamer` to handle `writeToFile` blocks more efficiently.
- Updated `constants.ts` to reflect changes in output format for composer instructions.
- Enhanced `ChatSingleMessage.tsx` to process `writeToFile` sections and integrate collapsible UI elements.
- Removed the deprecated `ComposerBlockStreamer` and its associated tests.
- Improved handling of XML codeblocks and unclosed tags during streaming.

* Fix reported bugs

* Refactor ActionBlockStreamer tests and implementation

- Updated `processChunks` to always push content, including null and empty strings, to the output.
- Adjusted test expectations to reflect changes in output handling for chunks with null content.
- Simplified regex in `findCompleteBlock` method by removing XML format handling.

* Fix reported issue

---------

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>

* Fix tool description generation (#1659)

* Access tool description from zod.shape when zod.properties is missing.

* Remove the access to schema.properties

* Remove unused print

* Also support schema.propertes

* Implement SimpleTool and remove Langchain tool calling (#1662)

* Make web search tool not overly eager

* Use SimpleTool interface instead of langchain tool call

- Replaced LangChain tool definitions with a new SimpleTool interface for better type safety and validation.
- Updated existing tools (e.g., writeToFile, localSearch, webSearch, and YouTube transcription) to utilize the new createTool function.
- Enhanced parameter extraction from Zod schemas for improved tool description generation.
- Cleaned up related code and documentation to reflect the new tool structure and ensure consistency across the codebase.
- Add tests

* Update ChatManager tests to handle undefined context cases

- Modified test cases in ChatManager to include handling of undefined context parameters.
- Ensured that the tests accurately reflect scenarios where no active file exists and when context is undefined.
- Improved overall test coverage for message processing in various contexts.

* Add validation tests for tool schemas and improve schema definitions

- Introduced comprehensive validation tests for tool schemas in `allTools.validation.test.ts` and `SearchTools.schema.test.ts` to ensure adherence to best practices and proper typing.
- Enhanced `SearchTools.ts` by replacing `z.any()` with specific object schemas for `chatHistory` to improve type safety.
- Added tests for various tool patterns, including metadata validation and schema best practices, ensuring tools are correctly defined and validated against expected interfaces.

* Add back example content for canvas file in ComposerTools schema

* Make web search tool not overly eager

* Add license key in agent mode (#1663)

* Add tool execution tests and implement Plus subscription checks (#1664)

- Introduced unit tests for the `executeSequentialToolCall` function to validate tool execution behavior, including handling of Plus-only tools.
- Enhanced `executeSequentialToolCall` to check for Plus subscription requirements before executing tools.
- Updated `createTool` and `SimpleTool` interfaces to include an `isPlusOnly` flag, indicating tools that require a Copilot Plus subscription.
- Marked existing tools (e.g., webSearch and YouTube transcription) as Plus-only where applicable.

* Add timezone conversion tools and enhance current time functionality (#1665)

* Add timezone conversion tools and enhance current time functionality

- Introduced `convertTimeBetweenTimezonesTool` to allow conversion of time between different timezones.
- Updated `getCurrentTimeTool` to accept an optional timezone parameter, improving its functionality to return time in specified timezones.
- Enhanced documentation and added examples for both tools in the codebase.
- Added comprehensive unit tests for the new timezone conversion functionality to ensure accuracy and reliability.

* Enhance timezone functionality and add unit tests

- Updated `getCurrentTime` and `convertToTimeInfo` functions to utilize Luxon's offset for accurate timezone calculations.
- Adjusted timezone offset handling to reflect correct signs.
- Added unit tests for Tokyo and New York timezone offsets to ensure accuracy in timezone calculations.

* Add unit test for past time conversion in timezone tool

- Introduced a new test case to verify that converting a past time (6:00 AM PT) to Tokyo correctly reflects the same day (January 15) without erroneously adding a day.
- Updated the `convertTimeBetweenTimezones` function to ensure accurate handling of past times without unintended date shifts.

* Enhance timezone handling and update related tests

- Added `convertTimeBetweenTimezonesTool` to facilitate time conversion between different UTC offsets.
- Updated `getCurrentTimeTool` to accept timezone offsets instead of names, improving accuracy and flexibility.
- Enhanced error handling for invalid timezone offset formats and added comprehensive unit tests to validate new functionality.
- Updated existing tests to reflect changes in timezone offset handling and ensure consistent behavior across various scenarios.

* Refactor timezone handling in convertTimeBetweenTimezones function

- Updated the creation of DateTime objects to interpret parsed dates as already being in the source timezone, improving clarity and accuracy in timezone conversions.

* Fix image in chat history (#1666)

* Refactor chat history handling to preserve multimodal content

- Removed the deprecated `extractChatHistory` function and replaced it with direct access to raw history from memory, allowing for the preservation of multimodal content.
- Updated `AutonomousAgentChainRunner`, `BaseChainRunner`, and `CopilotPlusChainRunner` to utilize `BaseMessage` objects for chat history, ensuring that both user and AI messages maintain their original structure and content.
- Enhanced message processing to accommodate multimodal inputs, storing them appropriately for later use.

* Refactor chat history handling to improve message processing

- Introduced `addChatHistoryToMessages` utility to streamline the addition of chat history, ensuring safe handling of various message formats.
- Updated `AutonomousAgentChainRunner` and `CopilotPlusChainRunner` to utilize the new utility, enhancing clarity and maintainability of the code.
- Removed deprecated manual processing of chat history to improve code efficiency and readability.

* Refactor chat history processing to enhance multimodal support

- Removed the deprecated `extractChatHistory` function and replaced it with `processRawChatHistory` to ensure consistent handling of chat history.
- Introduced `processedMessagesToTextOnly` function to extract text-only content from multimodal messages, improving clarity for question condensing.
- Updated `CopilotPlusChainRunner` to utilize the new processing functions, ensuring that both LLM and question condensing use the same data format.
- Added comprehensive unit tests for `processedMessagesToTextOnly` to validate its functionality across various message formats.

* Refactor memory management in BaseChainRunner to enhance context saving

- Removed the creation of `HumanMessage` and `AIMessage` objects for chat history, simplifying the process.
- Implemented `saveContext` for atomic operations, ensuring proper memory management while preserving input and output data.
- Noted that LangChain's memory now expects text content, which limits the saving of multimodal content.

* Remove multimodal content storage from userMessage in AutonomousAgentChainRunner and CopilotPlusChainRunner to streamline message processing. This change aligns with recent refactors to enhance memory management and improve clarity in handling chat history.

* Enhance ChatInput component with autonomous agent toggle button (#1669)

- Added a toggle for the autonomous agent feature, allowing users to enable or disable it within the ChatInput component.
- Updated the state management to synchronize the autonomous agent toggle with user settings.
- Introduced a button for toggling the autonomous agent mode, which is only visible in Copilot Plus mode.
- Refactored tool call logic to accommodate the new autonomous agent toggle, ensuring proper handling of tool calls based on the toggle state.

* Implement custom topic in conversation history (#1670)

* Refactor LoadChatHistoryModal and ChatPersistenceManager for enhanced topic handling

- Updated LoadChatHistoryModal to prioritize custom topics from file frontmatter, falling back to filename extraction if not present.
- Enhanced ChatPersistenceManager to generate AI topics for new chat files and preserve existing topics when updating files.
- Introduced new methods for finding files by epoch and generating AI topics based on conversation content, improving chat file management and organization.

* Refactor LoadChatHistoryModal and ChatPersistenceManager for improved topic handling

- Updated LoadChatHistoryModal to ensure custom topics are trimmed and validated before use.
- Enhanced ChatPersistenceManager to utilize reduce for efficient conversation summary generation, introducing constants for message and character limits to improve readability and maintainability.

* Implement tool call UI banner (#1671)

* Only add tool call to the user message when agent is off

- Updated the tool call logic to only add tool calls when the autonomous agent toggle is off, ensuring that the autonomous agent manages all tools internally when enabled.
- Improved code clarity by adding comments to explain the new logic.

* Implement tool call collapsible UI element

- Introduced a new utility for managing tool call markers, allowing for structured display and tracking of tool calls during execution.
- Updated the AutonomousAgentChainRunner to utilize the new tool call markers, improving clarity in the streaming response and tool execution process.
- Added a ToolCallBanner component for better visualization of tool calls in the chat interface, including execution status and results.
- Refactored ChatSingleMessage to handle tool call updates dynamically, ensuring that the UI reflects the current state of tool calls.
- Enhanced CSS for tool call containers and added animations for improved user experience.

* Fix disappearing tool call in final response

* Implement tool call result formatting

- Updated ChatSingleMessage to use a stable ID for message roots, enhancing memory management and preventing leaks.
- Implemented cleanup logic for old message roots to optimize performance.
- Introduced ToolResultFormatter to format tool results for better display in the UI, ensuring user-friendly output for various tool types.
- Enhanced ToolCallBanner to utilize the new formatter, improving the presentation of tool call results in the chat interface.

* Add YouTube transcription tool in agent and avoid mistrigger from context

- Replaced the deprecated simpleYoutubeTranscriptionTool with a new youtubeTranscriptionTool that automatically extracts YouTube URLs from user messages.
- Removed the processYouTubeUrls method to streamline the handling of YouTube transcriptions.
- Updated tool execution logic to pass the original user message to tools that require it, enhancing flexibility in tool usage.
- Improved the ToolResultFormatter to support multi-URL responses and provide better error handling for transcription failures.
- Enhanced documentation for YouTube transcription usage in the codebase.

* Enhance ToolCallBanner and ToolResultFormatter for improved user experience

- Added animation constants to ToolCallBanner for better visual feedback.
- Updated ToolResultFormatter to robustly handle JSON parsing, improving error handling for both single objects and arrays.
- Implemented input validation in YouTube transcription tool to prevent excessive input lengths and ensure proper data types.

* Refactor tool execution messages and enhance JSON parsing in ToolResultFormatter

- Updated the confirmation message for the writeToFile tool to be more concise.
- Added a private method in ToolResultFormatter to robustly parse JSON strings, improving error handling and ensuring consistent results.
- Streamlined the handling of search results by separating JSON parsing and regex extraction logic in ToolResultFormatter.
- Enforced required user message content in the YouTube transcription tool to prevent potential errors.

* Truncate long tool results for compact memory (#1672)

* Truncate long tool results for compact memory

- Introduced `processToolResults` utility to format tool results for different contexts, allowing for both truncated and full results.
- Updated `AutonomousAgentChainRunner` to utilize the new utility for improved memory management and clarity in tool result presentation.
- Added unit tests for `toolResultUtils` to ensure proper functionality of truncation and formatting methods, enhancing reliability and maintainability of tool result processing.

* Enhance tool results handling in AutonomousAgentChainRunner

- Added a conditional check to ensure that only non-null tool results are pushed to the llmFormattedMessages array, improving the robustness of message formatting and preventing potential errors from undefined values.

* Add Agent settings section (#1676)

* Add autonomous agent settings and tool configurations

- Introduced settings for enabling the autonomous agent mode, including maximum iterations and available tools.
- Updated the CopilotPlusSettings component to allow users to toggle tools like local search, web search, and YouTube transcription.
- Enhanced the model adapter to utilize the new settings for tool management.

* Enhance tool management by adding always available tools and updating tool usage guidelines in autonomous agent mode

* Make filetree tool always available

* Refactor tool management system to use a centralized ToolRegistry, enabling dynamic tool registration and configuration. Update settings structure to support enabled tool IDs and enhance UI for tool selection in the Copilot settings.

* Initialize built-in tools with vault access and improve tool registration logic

* Enhance documentation for initializeBuiltinTools function to clarify tool registration process and dynamic filtering of user-enabled tools.

* fix: Fix the shouldIndexFile method to return all files when inclusions is empty in project mode. (#1667)

* feat: Display all category items by default in the context-manage-modal. (#1657)

* Remove escapingXML for context data (#1678)

* Add apply command (#1677)

* Implement ReplaceInFile tool (#1661)

* Relevant note improvements (#1681)

* Change message scrolling behavior (#1680)

* Fix timetools and tests (#1683)

* Refactor time tool descriptions for clarity and examples

* Update XML escaping tests to reflect correct behavior and remove unnecessary settings mock

* Strip partial tool call tag (#1682)

* Strip partial tool call tag

* Show a placeholder message

* Remove perserveToolIndicators option

* Add tool dynamic prompt (#1679)

* feat: Enhance tool execution error messages and update custom prompt instructions for built-in tools

* feat: Add unit tests for ModelAdapter and enhance tool instructions for time-based queries

* feat: Implement detailed formatting for replaceInFile tool results

* feat: Enhance GPT model instructions and refine replaceInFile tool usage guidelines

* feat: Expand documentation on schema descriptions and custom instructions for tool usage

* feat: Refine tool documentation by clarifying schema descriptions and custom prompt instructions

* feat: Update GitHub Actions workflow to run on all pull requests regardless of target branch

* Fix tests

* feat: Update integration tests to validate writeToFile blocks and enhance replaceInFile usage example

* Enhance image extraction logic to support both wiki-style and markdown image syntax (#1685)

* Turn off agent when in Projects mode (#1686)

* Remove think and action blocks from copy and insert (#1687)

* Remove think and action blocks from copy, and fix composer for thinking models

* Refactor ToolSettingsSection layout for improved readability and consistency

---------

Co-authored-by: Claude <noreply@anthropic.com>
Co-authored-by: wenzhengjiang <jwzh.hi@gmail.com>
Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
Co-authored-by: Zero Liu <zero@lumos.com>
Co-authored-by: Emt-lin <41323133+Emt-lin@users.noreply.github.com>
2025-08-04 09:51:18 -07:00